Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01817 ATGCCATCAACGGTGAGGGATCACAGGATTGTTCGGAGGATGGCAAGTCTTCCTCGAAGCATAATGGGGGGTATTTCAAGGGCAATGGGGGATGGTATGTGCTTAGTAGGAATAGGAAGAAGAAGAACAAACCAACGTGCACATTTTCCATCGCAGCCTCAAGATCATGTTCCACAACCACGTGATCACGTAGTGGTTCCTGAGGAATGGAGTTTCCTAGAGAGCTTTGAGCAGCAATATGGCACCAAACATCCTTTCTTCTATGCTTGCCGTTTAGGGGAAGCCATGAAGTTAGCAGAACAAGAGCACAAGTTCTTGCTCATGTACCTTCACTCTCCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAGACCCTGTGTTCGGAGCTAGTGACCCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGTGCTCTTGCAGATAGAGGAGAGGGACTGCAAATGGTTGCAACGCTAAGTCCTGCTACCTTTCCCTGTTGTGTTGTCATAGCCCCTGCTTCTGGTGAGAGCATAGCAGTGCTGCAACAGCTAGAGGGACCCCTTTCACCAGCTGAGCTAGTGGAGATTCTACAGAGAACTTTGGAAGAACAAGGGGTGGCTTTTGGAAGTGCCAAAGCCAAGCAGGAAGAAAAGATCCGAACAGATCGTAGGCTTAGAGAAGAACAAGATGCTGCTTATCTGGCAGCTTTGCAAATTGACAAGAAAAAAGACAAACTCACTAATTTATCTTCGAGAGAGAGAGTTCAAAAGCCAGTGGAATCTCAGAACAGCACTAATTATGGAAGAATGGGGACCAATTCTACCAATGTCACTAAACAGCACAACAAAGTGAATGAGTCCTCTGGAGAAAAACAAGACAAGGGAATTGCAAATAAAGGAAGCGAGTCTCAGCCCACACAGATACTGATAAGATTTCCAAACGGTGAAAGAAGAGAGCATACTTTCCTCTACACAGACAAAATCCAGTCCATTTTCTCATACATCGATTCATTAGGTTTGCCGGGGATTGGTAACTACAGGTTGATATCAAACTTCCCAAGAAAAGCTTATGGTGTTGATCAAATGAGAATGACACTCAAAGAAGCTGGCTTGTATCCTAAAGCTAGTGTGTTCCTAGAGCCTTTGTGA 1146 0.4503 MPSTVRDHRIVRRMASLPRSIMGGISRAMGDGMCLVGIGRRRTNQRAHFPSQPQDHVPQPRDHVVVPEEWSFLESFEQQYGTKHPFFYACRLGEAMKLAEQEHKFLLMYLHSPDHPFANVFCKETLCSELVTQFLDVNFVCWGALADRGEGLQMVATLSPATFPCCVVIAPASGESIAVLQQLEGPLSPAELVEILQRTLEEQGVAFGSAKAKQEEKIRTDRRLREEQDAAYLAALQIDKKKDKLTNLSSRERVQKPVESQNSTNYGRMGTNSTNVTKQHNKVNESSGEKQDKGIANKGSESQPTQILIRFPNGERREHTFLYTDKIQSIFSYIDSLGLPGIGNYRLISNFPRKAYGVDQMRMTLKEAGLYPKASVFLEPL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01817 381 CDD UBX 307 379 - -
Cca11g01817 381 Gene3D Glutaredoxin 66 205 - -
Cca11g01817 381 MobiDBLite consensus disorder prediction 246 302 - -
Cca11g01817 381 CDD UAS 92 202 - -
Cca11g01817 381 PANTHER FAS-ASSOCIATED PROTEIN 8 380 - -
Cca11g01817 381 SUPERFAMILY Thioredoxin-like 66 205 IPR036249 -
Cca11g01817 381 SMART 45neu3 71 197 IPR006577 -
Cca11g01817 381 SUPERFAMILY Ubiquitin-like 298 380 IPR029071 -
Cca11g01817 381 SMART ubx_3 298 380 IPR001012 GO:0005515
Cca11g01817 381 MobiDBLite consensus disorder prediction 251 282 - -
Cca11g01817 381 Pfam UBX domain 301 379 IPR001012 GO:0005515
Cca11g01817 381 ProSiteProfiles UBX domain profile. 300 378 IPR001012 GO:0005515
Cca11g01817 381 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 380 - -
Cca11g01817 381 Gene3D - 299 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01817 Cca-Chr11 43176123 43178497 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01817 K18726 - gmx:100775212 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01817 11 43176123 43178497 Cca11g01817 11 43176123 43178497 ECH