Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01813 ATGTCTTCCCCTACTCATTTCGACGATGACTTTGATTTCGGAGGCAGTTTTGGCGGAACGCATTCAGGTAGCAAGAGGTCATCTCCCGACTATGACGAGGATGATTATGAGAATGATCCTTTTGGACAGAAGAAGTCCAAATCAAAAGCTGAAGAAGCTGCTTCTGGCGTCACAACAGGAATGATTTTGTCTCTTCGTGAGAGTCTGCAGAACTGTAAGGATACGCTTGCTATATGCCAAAATGAACTTGAGGATGAAAAATATGAGATTAAGAAGTGGCATTTTTCATTTCAAAATGAACCTTTTATATCTGCTGGGACCACTCCAGCACCAAAATTGGTGATTAATTATCTTCAAGCTCTGAAATCATCTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAAGCAAAGAAAAAGGAAGCTGCATTCATTGTCACATTTGCAAAACGAGAACAAGAAATAGCAGAGTTGAAGTCTGCAGTACGGGACCTGAAAGCGCAACTCAAGCCAGCTTCTATGCAGGCAAGGAGGTTGTTGCTAGATCCAGCAGTTCATGAAGAATTCACTCGATTAAAGAATTTAGTTGAGGAAAAGGATAAAAAAGTAAAGGAGTTGCAAGATAACATTGCTGCTGTAAATTTTACCCCACAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTACAGGAGGAAAATGAGGAGATTGGGAATCAGGCATCTGAGGGCAAGATGCATGAATTATCAATGAAACTTTCAGTACAAAAATACCAAAATGCAGAACTCAGAAATCAATTTGAAGGGTTGCAAAAACATATGGATGGATTGACAAATGATGTGGATAGATCCAATGAAATGGTGTTAATGTTGCAAGATAAATTAGAAGAGAAGGATCTGGAGATCCAAAGACTGAAAGATGAGTTGCAACCAAAAAACCTCGTGGTGGACGGGAAAACAAATCCGGCATCTAATAGGAAAGACGATGAAACGATACCCACGGAAGACGCTAACTAA 1017 0.4022 MSSPTHFDDDFDFGGSFGGTHSGSKRSSPDYDEDDYENDPFGQKKSKSKAEEAASGVTTGMILSLRESLQNCKDTLAICQNELEDEKYEIKKWHFSFQNEPFISAGTTPAPKLVINYLQALKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPASMQARRLLLDPAVHEEFTRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKMLMAKCRTLQEENEEIGNQASEGKMHELSMKLSVQKYQNAELRNQFEGLQKHMDGLTNDVDRSNEMVLMLQDKLEEKDLEIQRLKDELQPKNLVVDGKTNPASNRKDDETIPTEDAN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01813 338 Coils Coil 69 89 - -
Cca11g01813 338 Coils Coil 146 166 - -
Cca11g01813 338 MobiDBLite consensus disorder prediction 310 338 - -
Cca11g01813 338 Coils Coil 187 207 - -
Cca11g01813 338 MobiDBLite consensus disorder prediction 322 338 - -
Cca11g01813 338 MobiDBLite consensus disorder prediction 26 51 - -
Cca11g01813 338 Pfam WTAP/Mum2p family 134 288 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cca11g01813 338 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 1 332 - -
Cca11g01813 338 Coils Coil 260 280 - -
Cca11g01813 338 MobiDBLite consensus disorder prediction 1 53 - -
Cca11g01813 338 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 1 332 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cca11g01813 338 Coils Coil 288 308 - -
Cca11g01813 338 Coils Coil 118 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01813 Cca-Chr11 43068655 43076685 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01813 K22824 - gmx:100776997 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01813 11 43068655 43076685 Cca11g01813 11 43068655 43076685 ECH