Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01806 ATGGGATCGCATCGCATGGGTATGAAAGAGGAGGAGAGTGGCATAGAAGAAGGTGGTGCCTCGCTGCCATCAGCAGGCTTAGATGGGAAGAAGCGAAGAGTGACATACTTCTACGAGCCAAGCATCGGCGATTACTACTACGGCCAGGGGCACCCAATGAAGCCCCACCGCATCCGCATGGCGCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATTAACCGCCCCTTCCCCGCCTCCCCCGCCGACATTCGCGGCTTCCACTCCGACGACTACGTCCGCTTCCTCTCCTCCGTCTCCCCCGAGACCCTCTCCGACTCCCGCCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCTGTCTTCGACGGCCTCTTCGACTTCTGCCAGGCCTCCGCCGGCGGATCCATCGGCGCCGCCGTCAAACTCAACCGCCAAGACGCCGACATCGCCATCAATTGGGCTGGCGGTCTTCACCACGCCAAGAAGTCTGAGGCCTCTGGCTTCTGTTACGTCAACGACATTGTCCTCGGCATCCTCGAACTTCTCAAACTTCACCGTCGTGTGTTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCTTTCCATAAGTTTGGGGACTTTTTCCCTGGCACGGGACACATCAAAGACATTGGGCTGGGCTCAGGAAAGAATTATGCTGTCAATGTCCCTTTAAATGATGGGTTGGATGATGAGAGTTTCAGGGGTCTGTTTCGAGCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGAAGCAGTTGTTCTTCAATGTGGAGCAGATTCATTGTCTGGGGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTACGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGTCCAGATTATACTCTCTACGTCGATCCAAGCAACATGGAGAACCTAAATACACCCAAGGATATGGAAAAAATAAGGAACACATTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTAGAAGTTCCAGAAGAGGCGGAAGAGGACATGGATAGAAGACCTAAACTTCGTAAATGGGATGGTGAAGATTATGATTCAGATCCCGATGAAGATTTAAAGGCCATTTCCGGGTGCTCAAACATCACTGCCCATTCGAGGGACATTGCAGATGACATGGAAGAAGAGAAGAAGCCAGAAGTGCATCCATCATCATCATCTTGTTGTTGA 1437 0.5045 MGSHRMGMKEEESGIEEGGASLPSAGLDGKKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPADIRGFHSDDYVRFLSSVSPETLSDSRHLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKLHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGLGSGKNYAVNVPLNDGLDDESFRGLFRAIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRNTLLEQISRLPHAPSVPFQTTPPTLEVPEEAEEDMDRRPKLRKWDGEDYDSDPDEDLKAISGCSNITAHSRDIADDMEEEKKPEVHPSSSSCC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01806 478 PANTHER HISTONE DEACETYLASE 6 18 444 - -
Cca11g01806 478 MobiDBLite consensus disorder prediction 456 471 - -
Cca11g01806 478 MobiDBLite consensus disorder prediction 416 433 - -
Cca11g01806 478 Gene3D Histone deacetylase domain 24 407 IPR037138 -
Cca11g01806 478 MobiDBLite consensus disorder prediction 395 478 - -
Cca11g01806 478 MobiDBLite consensus disorder prediction 1 16 - -
Cca11g01806 478 Pfam Histone deacetylase domain 51 339 IPR023801 -
Cca11g01806 478 PRINTS Histone deacetylase signature 53 70 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PRINTS Histone deacetylase signature 86 104 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Cca11g01806 478 PANTHER HISTONE DEACETYLASE 18 444 - -
Cca11g01806 478 CDD HDAC_classI 37 341 - -
Cca11g01806 478 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g01806 478 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Cca11g01806 478 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Cca11g01806 478 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Cca11g01806 478 SUPERFAMILY Arginase/deacetylase 32 394 IPR023696 -
Cca11g01806 478 PIRSF HDAC_I_euk 9 475 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01806 Cca-Chr11 42944705 42948347 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01806 K06067 - gmx:100807923 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01806 11 42944705 42948347 Cca11g01806 11 42944705 42948347 ECH