Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01798 ATGCCGGACAAATCACTCAAGTTGAATACATGGCAACTCAAGTATCTCAGAATAGCAACCCGGTTTGGCTTGCTAGCAGAAGCCAGCCTGGCATTGCTGCTTCTTCCTATTTTAAGGGGGTTGGCTGTGTTTCGCATACTTGGCATTCAGTTTGAAGCTTCAGTTAGATATCATACCTGGCTCGGCACTGCAATGATACTTTTTGGTACGATACATGGCGCAAGCACCTTGTTGGTCTGGGGGGTCAGCCACCATATACAGCATGAGATTTGGAAGTGGCAAAAGACAGGACGTATATACCTCGCTGGGGAGATTACGCTTGTGGTGGGGCTAGTTATATGGATCACTTCACTTCCCCAAATTAGAAGGAGAAAGTTTGAAATATTCTACTACACACATCATTTGTATGCAGTCTTTCTAGTATTTTTCTTGTTTCATGGTGGGGATAGGCACTTTTATACAGTCTTCCCAGGAATATTCCTTTTTAGCCTTGATAAACTGATCCGAATCATACAATCAAGTCCAAAAACTTGCATCGTTTCTGCTAGAATTTTTCCCTGCAAAGCTGTGGAGCTAATCCTTCCCAAAGATCCTGGGCTGAAATATAACCCTACAAGTGTTATATTTTTGAAGATGCCAACCATATCTCATCTTCAATGGCACTCGTTCAGTATAATATCTAGTTCCAGGGCTGATGACCATATTTTGTCTGTGATAATTAAATGTGAAGGGAGGTGGACTAATTCTCTTTATGACCTGGTACATGCTGAACTAGACAAAACTGCAGATAAAAGGAAGGGAATACCTGTTGCAATCGAAGGACCTTATGGACCTCCTTCATTAGACTTTTTGAGATATGACACCCTTCTTCTGGTTGCTGGCGGAAGTGGAATAACCCCATTTCTGAGCATTTTGACAGAAGCTGATTCAGCTACCAGCAAAAGCAGATTTCCCTCGAGAATACAGCTTGTGTATGTCATTAAAAAGGCACAAGACTTCTGTCTGTTACATTCAATCTCGCATCTGTTACTCAACCAACCAACTGAAAATTTTCATTTGAATCTAAAATTGTTTGTAACCCAAGAAACACAAGCGGAGGTGGGAACTAGGGAGCTACTAAATGAGTTCTTAAAAGTCAGAACCCTGCAAATGAACAGCGTGTGTTCAGATTATGCAGCATACGGGCCTGAAAGTCCATCTTGGATGGCTGTCATTGTAGGATTTTGCTCCATCATTTTCCTTATTTTCCTTATCTGTTTCAACCATTTTATAATTCCATCTGGAAAGCGGTCCAAAATGACAAAGGAAAAGACTCCCTCTTGGGTTGTGGATCTTCTTCTGATAGCTGCTTTTGTCCTAGCTTTAGGTTGCAGCACCTCGGTGGCAGCTATTTTGAGATGGAGAAGGCTTAGGAAAGGGATTCCACAAATATCGCAAAGAGAAATTAAACCCCTTGATCTAAGTTCAGATGAAGCTAGGAATGCACTTGAAGAACATGAAGTGCATTTTGGGGGAAGGCCTAACTTTAAAGATATATTTGGCAAGCTCCGGAATGAAAGCGGTGGATCTAATATTGGAGTTTTGGTTTGTGGACCTGAAAGCATGAAGGAATCGGTGGCGGCCGCATGCAAGCAGGAATCCGAGTGTATCAAGTTCAGTGCAAAGAGAACAGAATCCTGCTTCACTTTCCACACTCTCAACTTCACGCTGTAA 1713 0.4215 MPDKSLKLNTWQLKYLRIATRFGLLAEASLALLLLPILRGLAVFRILGIQFEASVRYHTWLGTAMILFGTIHGASTLLVWGVSHHIQHEIWKWQKTGRIYLAGEITLVVGLVIWITSLPQIRRRKFEIFYYTHHLYAVFLVFFLFHGGDRHFYTVFPGIFLFSLDKLIRIIQSSPKTCIVSARIFPCKAVELILPKDPGLKYNPTSVIFLKMPTISHLQWHSFSIISSSRADDHILSVIIKCEGRWTNSLYDLVHAELDKTADKRKGIPVAIEGPYGPPSLDFLRYDTLLLVAGGSGITPFLSILTEADSATSKSRFPSRIQLVYVIKKAQDFCLLHSISHLLLNQPTENFHLNLKLFVTQETQAEVGTRELLNEFLKVRTLQMNSVCSDYAAYGPESPSWMAVIVGFCSIIFLIFLICFNHFIIPSGKRSKMTKEKTPSWVVDLLLIAAFVLALGCSTSVAAILRWRRLRKGIPQISQREIKPLDLSSDEARNALEEHEVHFGGRPNFKDIFGKLRNESGGSNIGVLVCGPESMKESVAAACKQESECIKFSAKRTESCFTFHTLNFTL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01798 570 Gene3D - 270 405 IPR039261 -
Cca11g01798 570 Gene3D - 463 568 IPR039261 -
Cca11g01798 570 Pfam FAD-binding domain 180 280 IPR013112 GO:0016491
Cca11g01798 570 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 157 282 IPR017927 GO:0016491
Cca11g01798 570 SFLD Ferric Reductase Domain 9 547 - -
Cca11g01798 570 CDD NOX_Duox_like_FAD_NADP 179 333 - -
Cca11g01798 570 SUPERFAMILY Riboflavin synthase domain-like 178 279 IPR017938 -
Cca11g01798 570 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 270 383 IPR039261 -
Cca11g01798 570 Pfam Ferric reductase NAD binding domain 286 543 IPR013121 GO:0016491
Cca11g01798 570 PANTHER NADPH OXIDASE 5 569 - -
Cca11g01798 570 SFLD Ferric reductase subgroup (FRE) 9 547 - -
Cca11g01798 570 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 5 569 - -
Cca11g01798 570 Pfam Ferric reductase like transmembrane component 23 143 IPR013130 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01798 Cca-Chr11 42843388 42846991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01798 43 570 Miscellaneous Gene Families AT5G50160 49.639 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01798 K00521 - gmx:100816560 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01798 11 42843388 42846991 Cca11g01798 11 42843388 42846991 ECH