Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01793 ATGGAGTCTGCTCTAGTGATTAAGGTAAAATATGGAGATACCCTCAGGCGCTTCAGTGCTCGTGTGGACCAGAATAATCAACTGGAGTTGAACATGGCTAGGTTGAGGGCTAAGATATGTTCTATCTTCGGTTTCAGTTCTGATGAAAATTTAATTCTGCgatatgttgatgaagatggtgacttggtgactctggctgatgatgatgatttgcatgatgtgatgaGGCAGCAATTGAAGTTCTTGAGAATTGATGTACATATCAACAATGACAGTTGTGGTAAATCGAATGCTGGGTCTAGTGGAAGTGCCACTCCCTTGGAACCTCCCCCTGTCAGAAACCCATTTCTGAGTAGGGATGCTATAGCTTCATATCCTCTGCCAGAGCCAGTACGTGAGGCTCTTTCTAAGTTATCAATATCAAAAGCTGCATCTTCAAGTCCTCTGGTTGATAATCTTGCCCTTTCAATTTTGAAAATGGGACAAGCCCTTCTAAATACTAGTTTTCAGCCTCGTGATGAAGCTGGTACAAGCTCAAAAAGTGGTGTTCCTGAAGAACATGTCACTTCTGAAACAATAGGTACGAATTCTCCAAATGTGGACTCAGCCTCCAAACAGGTGGAGGCTGGAAACGTAACCAGAGGTGTAGTCTCTGCCTCCAATGCCAGTCAACAGGTGGACACTGGGAATGTAATTAGAAGTGTAACAACAGCTGCAGGAGTTGCTGCCGTTGATCTCAATAGTCCTCCATGTGATCCCGATTCATCTCAGTCTGCAAATGTAATTAAGACTCCACTATCATCAGAAGTCCCTGATGGAGAAGGCATGAAGGTTAAAGTGTCTGCTGTCGGTAGTTATGCTGCTAAGGGTGACAGTGGGGGGGCATCCTCAAGTTCTGCAGGTCCTAATTACAGTTCGACCCAGATTAATTCATTGAGTTCTGGTTCTTTCATTGAGTGTCCATTTTCTGGGACATACATACCACCACATCTTAGAAACTCTCATATCCCCCCTTTTAAAAGGAGCCACAGTCACACTGAGGCAATGACTGGAATGTTTCACAAAGGGGTTCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGCTTCAAATCCAAAGTAAAGGAAAATTACGATCTCTGCAACATTTGTTTCAATGAAATGGGTAATAGGACAGATTATATCAGAATGGACCACCCTGCATCTTCTCGTGGCCCTCCATGCGTATATGGGCATACAAATAACATTGCAACATTACCACCACATATTTTTAAGAAAGGTGCAATTTTGAAGCATGGAAGGCCAAAGCTTGATAGTCAGTTTATTTTGGATGTCAATGTGATAGATGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCTCTATGATGTGGCCCAAGGGAACTCAACTTGTTTGGACTGGAGGAGACACATTTAGTTACTCCTGTTCGATTGACTTAGAGGTTCCCGAGGATGGTGTCCCTGTTGGGAAGGAACTTGACATTGCCGTTGACTTTACAGCACCTCAGTTACCTGGTCAATACACATCATACTGGAGGATGGCAACTCGATCTGGACATAAATTTGGCCAACGTGTTTGGGTCTCTATACAGGTAAATGAGTGTTGA 1659 0.4207 MESALVIKVKYGDTLRRFSARVDQNNQLELNMARLRAKICSIFGFSSDENLILRYVDEDGDLVTLADDDDLHDVMRQQLKFLRIDVHINNDSCGKSNAGSSGSATPLEPPPVRNPFLSRDAIASYPLPEPVREALSKLSISKAASSSPLVDNLALSILKMGQALLNTSFQPRDEAGTSSKSGVPEEHVTSETIGTNSPNVDSASKQVEAGNVTRGVVSASNASQQVDTGNVIRSVTTAAGVAAVDLNSPPCDPDSSQSANVIKTPLSSEVPDGEGMKVKVSAVGSYAAKGDSGGASSSSAGPNYSSTQINSLSSGSFIECPFSGTYIPPHLRNSHIPPFKRSHSHTEAMTGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCNICFNEMGNRTDYIRMDHPASSRGPPCVYGHTNNIATLPPHIFKKGAILKHGRPKLDSQFILDVNVIDGTMMAPSTAFTKIWRMRNNGSMMWPKGTQLVWTGGDTFSYSCSIDLEVPEDGVPVGKELDIAVDFTAPQLPGQYTSYWRMATRSGHKFGQRVWVSIQVNEC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01793 552 MobiDBLite consensus disorder prediction 95 115 - -
Cca11g01793 552 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Cca11g01793 552 Pfam Zinc finger, ZZ type 354 389 IPR000433 GO:0008270
Cca11g01793 552 PANTHER PROTEIN ILRUN 1 549 - -
Cca11g01793 552 SUPERFAMILY CAD & PB1 domains 4 80 - -
Cca11g01793 552 MobiDBLite consensus disorder prediction 171 204 - -
Cca11g01793 552 CDD NBR1_like 437 549 IPR032350 -
Cca11g01793 552 Gene3D - 1 88 - -
Cca11g01793 552 Pfam Ig-like domain from next to BRCA1 gene 448 549 IPR032350 -
Cca11g01793 552 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 549 - -
Cca11g01793 552 SMART zz_5 353 398 IPR000433 GO:0008270
Cca11g01793 552 Pfam PB1 domain 6 84 IPR000270 GO:0005515
Cca11g01793 552 Gene3D Immunoglobulins 434 552 IPR013783 -
Cca11g01793 552 ProSiteProfiles Zinc finger ZZ-type profile. 354 404 IPR000433 GO:0008270
Cca11g01793 552 Gene3D - 345 405 IPR043145 -
Cca11g01793 552 SUPERFAMILY RING/U-box 348 404 - -
Cca11g01793 552 SMART PB1_new 4 89 IPR000270 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01793 K17987 - gmx:100778692 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01793 11 42781033 42785297 Cca11g01793 11 42781033 42785297 ECH