Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01791 ATGAACCGCGTTAAGGCAATTGCCGCTTCCCTCAGAATGCTCGAGTCGTCACTCGGAACTCGGAACCAGGTGACTCACTTCTCTCTCCATAATCCACTACCCCTTTTGGATAGGTCTCACTTTTTACGTTTTCCCATCACTCACCACAAACTCTATTTTTCTACAAAACCGAACACCATTGTGGAGCTTGTTTTGACCAACGATTGGTCACAAGAGTTAGAGCACAAGTTAGAAAATCGTTGCCCATCTATGACCCATGAAACCGTTCTTTACGTTATAAAGCGGTTGGATAAAAACCCAGAAAAAGTTTCGTCTTTTTTCAATTGGGTCAGTAAGAAAGAATGGTTTAGGGCTAGTTCTTCGCTGTATAGCTTAATTGTTAGGGTTTTGGCGACCAAGGATACGATGAAGCAATTTTGGGTTACTCTAAGGATGATGAAGGAAAAGGGGTTTTATCTTGATGAAGAAACATATTTGACGATTCTTTATGGTTTTAAAAGGGAAAAGATGGACAGCGATTCTGTTGCTTTGACTCACTTCTATGATCGGATGGTAGAGGAGAATGCAAAGCAAAGTATTGTCACCAGGGTGGTTGATATCATTTCAGTGTCTGAATGGGGTGATGGGGTTAAGGATGAACTTGCAAAGCTTCAAATTCAGCTTTCGGATAATTTAGTAATAAGGGTTTTGAAAGAGCTTAGGAATGCTCCTTTAAAGGCTTACGAGTTCTTTCATTGGGTTGGGAAGCAATCTGGTTATGAGCATAATACAGTGACTTACAATGCTGTTGCAAGAGTTCTTGCGCGGTCTGACTCAATTGAGGAGTTTTGGAGTGTTATTGAGGAGATAAAGAATGTGGGTCACGAATTGGATATTGATACTTACATAAAGATATCGAGGATGCTTCAAAAGAATAGGTTGATGGAGGATGCTGTCAAGCTTTACGAGCTTATGATGGATGGTTCATATAAGCCATTGGTCCAGGATTGCAGCATTCTTTTGAAAAGCATCTCTGGAAGTGATAAGCCAAATTTGGATTTAGTTTTCAGGGTTGCTAAGAAATTTGAGTCAACAGGGCACACTCTCTCCAAGGCAATCTATGATGGAATCCACAGGTGTTTGACTGGTGCTGGGAAATTTGATGAAGCTGAAAATATTGTTAGGACTATGAGAAATGCTGGCCATGAGCCTGATAACATCACCTACAGTCAATTGGTTTTTGGACTTTGTAAGATGAGGAGGTTTGAAGAAGCATATAAAGTGCTGGAGGAGATGGAATCTTGTGGATGCATCCCGGATATTAAGACTTGGACCATCTTGATCCAAGGGCATTATGATGGCAATGAAGTAGATAAAGCATTGCTTTGTTTTACTAAGATGATTGAAAAGGGCTGTGATCCAGATGCTGATTTGTTGGATGTTATGATTGAAGGTTTTCTTAGACAAAAGAGAATAGAAGGTGCATACGAGTTGCTTATGGAGATAAGTAGGAAGTGTCGTATATCTCCATGGCAAGCTACATATAAGAAACTGATTGAAAAGCTATTAGGAGTCATGAAGTTTGAGGAAGCACTCAAACTTCTTCGTTTGATGAAGAGCCACAACTACCCTCCGTACCACCTACCCTTTGTGCCTTATATTTCAAAGTTTGGGTCTGTGGAGGATGCTGATCAATTCCTGAAGGCATTGAGTGTAAAAAGCTACGCATCCCATACAGTTTATGTTCAGGTTTTTGAATCCTTGTTCAGAGAAGGTAGACTCTCGGAGGCCAAAGATCTATTGTACAAGTCTCCTCACCATATACGTAAGCATAGTAAAATCTGTAAACTTTTTGGTTCATCCGAGAGTGACCCTCAGGTGCTGCCTAATCCCTAG 1875 0.4069 MNRVKAIAASLRMLESSLGTRNQVTHFSLHNPLPLLDRSHFLRFPITHHKLYFSTKPNTIVELVLTNDWSQELEHKLENRCPSMTHETVLYVIKRLDKNPEKVSSFFNWVSKKEWFRASSSLYSLIVRVLATKDTMKQFWVTLRMMKEKGFYLDEETYLTILYGFKREKMDSDSVALTHFYDRMVEENAKQSIVTRVVDIISVSEWGDGVKDELAKLQIQLSDNLVIRVLKELRNAPLKAYEFFHWVGKQSGYEHNTVTYNAVARVLARSDSIEEFWSVIEEIKNVGHELDIDTYIKISRMLQKNRLMEDAVKLYELMMDGSYKPLVQDCSILLKSISGSDKPNLDLVFRVAKKFESTGHTLSKAIYDGIHRCLTGAGKFDEAENIVRTMRNAGHEPDNITYSQLVFGLCKMRRFEEAYKVLEEMESCGCIPDIKTWTILIQGHYDGNEVDKALLCFTKMIEKGCDPDADLLDVMIEGFLRQKRIEGAYELLMEISRKCRISPWQATYKKLIEKLLGVMKFEEALKLLRLMKSHNYPPYHLPFVPYISKFGSVEDADQFLKALSVKSYASHTVYVQVFESLFREGRLSEAKDLLYKSPHHIRKHSKICKLFGSSESDPQVLPNP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01791 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Cca11g01791 624 PANTHER OS01G0970900 PROTEIN 1 614 IPR044578 GO:0008380
Cca11g01791 624 Gene3D Tetratricopeptide repeat domain 344 428 IPR011990 GO:0005515
Cca11g01791 624 Pfam PPR repeat 436 465 IPR002885 -
Cca11g01791 624 Pfam PPR repeat 258 287 IPR002885 -
Cca11g01791 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Cca11g01791 624 Pfam PPR repeat 394 426 IPR002885 -
Cca11g01791 624 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Cca11g01791 624 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Cca11g01791 624 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Cca11g01791 624 Gene3D Tetratricopeptide repeat domain 210 342 IPR011990 GO:0005515
Cca11g01791 624 Gene3D Tetratricopeptide repeat domain 58 205 IPR011990 GO:0005515
Cca11g01791 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Cca11g01791 624 Gene3D Tetratricopeptide repeat domain 448 614 IPR011990 GO:0005515
Cca11g01791 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Cca11g01791 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Cca11g01791 624 PANTHER OS01G0970900 PROTEIN 1 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01791 Cca-Chr11 42770859 42773033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01791 288 593 Miscellaneous Gene Families AT4G11690 21.835 2.37e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01791 - - gmx:100815857 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01791 11 42770859 42773033 Cca11g01791 11 42770859 42773033 ECH