Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01762 ATGCAACACATTGACCAATCTGATTCCTTGGGTCCAAGAAATCCTGAGTGGACCCCTCCACTTCCTTTGTTGCCCCAAGGAGCTACGCTTGAGACCCTTCTGTGTTGGCCAAGTGTCTACCCTTGTACGCATGCCACGTGCCTCTCCAACCACTACTTATGTTCCCGCTTCAGCTACTCCCTACTCCTACAACACCTTTCACTTCCAAGTTCAAACATGAATTCCCCAAAGCACCACCACTGCGTCACTTCCCTCAAAACCCTAACCCCCCACATCACCTGCCTGGCGCTCCACCGTAACCTCCTCTACGCCGCATCCCTCAACCTCATCAACGTCTTCGACCTCTCCCACCACTCCCACATCGACGCCTTCAACCAAAGCCCCGCCTCAGGCTTCGTCAAGTCCATCGCATTCAGAGCCTCAAAGGTCTTCACCGCGCACCAAGACTGCAAGATTCGCGTCTGGCTCATCACCCCCTCCAAACGACACCGTCTCCTCTCCTCCCTCCCCACCGTCGCCGACCGCCTGCGCCGCTGCATCGTCCCCCGCAACTACGTCAGCGTCCGCCGCCACAAGACCACCCTCTGGATCCAGCATTGCGACACCGTCTCCGGCCTGGCCGTCAACCACACCCTCATGTATTCCGTTTCCTGGGACAAGAGCTTCAAGGTTTGGGACCTCTTCAGTTACCGCTGCTTGGAGTCCGTCACGGCGCACGACGACGCCATCAACGCCGTGGCCGTCGGCGGAGACGGCACCGTCTACACGGCCTCCGCGGACGGGAGCATCAAGGTCTGGAGGAGAGGCAACGAGGCCAAGCGGCATGCGTTGGTGAGCAACATAGGGAAGCAGAAGTCGACGGTGAATGCGCTTGTTTTGGATGGTGACGGCACGGCTTTGTTTTCCGGCGGTTGCGACGGCGCCATCTGCCGGTGGGTGTGGGGGGAGAACGACGTGGTGAAGATGGAGACTTTGCGGGGTCACGGTGGGGCCATATTGTGTCTGATCCACGTGGCGGGGGTGTTGGCGAGTGCGTCAGCGGATCTAACGGTTAGGATCTGGCGAGGTCAAAGAGGGAGTGGTGGGTATTGTTGCAGGGCGGTGTTGGAAGGGCACCAGAAACCGGTGAAGTCATTGGTGGCGTTTTCTGGTGAGGGAGACTCCAACGGCGTCGTTACTCTCTTCAGTGGAAGCCTTGACGGGGAGATTAAGGTCTGGGAGGTCTTTGCTTTGCTTTGA 1239 0.5851 MQHIDQSDSLGPRNPEWTPPLPLLPQGATLETLLCWPSVYPCTHATCLSNHYLCSRFSYSLLLQHLSLPSSNMNSPKHHHCVTSLKTLTPHITCLALHRNLLYAASLNLINVFDLSHHSHIDAFNQSPASGFVKSIAFRASKVFTAHQDCKIRVWLITPSKRHRLLSSLPTVADRLRRCIVPRNYVSVRRHKTTLWIQHCDTVSGLAVNHTLMYSVSWDKSFKVWDLFSYRCLESVTAHDDAINAVAVGGDGTVYTASADGSIKVWRRGNEAKRHALVSNIGKQKSTVNALVLDGDGTALFSGGCDGAICRWVWGENDVVKMETLRGHGGAILCLIHVAGVLASASADLTVRIWRGQRGSGGYCCRAVLEGHQKPVKSLVAFSGEGDSNGVVTLFSGSLDGEIKVWEVFALL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01762 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 266 IPR001680 GO:0005515
Cca11g01762 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 266 - -
Cca11g01762 412 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 77 408 IPR045182 -
Cca11g01762 412 SMART WD40_4 117 156 IPR001680 GO:0005515
Cca11g01762 412 SMART WD40_4 318 355 IPR001680 GO:0005515
Cca11g01762 412 SMART WD40_4 78 114 IPR001680 GO:0005515
Cca11g01762 412 SMART WD40_4 229 267 IPR001680 GO:0005515
Cca11g01762 412 SMART WD40_4 274 313 IPR001680 GO:0005515
Cca11g01762 412 SMART WD40_4 362 407 IPR001680 GO:0005515
Cca11g01762 412 SMART WD40_4 190 226 IPR001680 GO:0005515
Cca11g01762 412 Gene3D - 185 411 IPR015943 GO:0005515
Cca11g01762 412 Gene3D - 71 175 IPR015943 GO:0005515
Cca11g01762 412 Pfam WD domain, G-beta repeat 365 406 IPR001680 GO:0005515
Cca11g01762 412 Pfam WD domain, G-beta repeat 323 354 IPR001680 GO:0005515
Cca11g01762 412 Pfam WD domain, G-beta repeat 231 266 IPR001680 GO:0005515
Cca11g01762 412 ProSitePatterns Trp-Asp (WD) repeats signature. 394 408 IPR019775 -
Cca11g01762 412 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 77 408 - -
Cca11g01762 412 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Cca11g01762 412 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Cca11g01762 412 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Cca11g01762 412 SUPERFAMILY WD40 repeat-like 78 407 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01762 Cca-Chr11 42295397 42296918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01762 226 407 Acyl Lipid Metabolism Gene Families AT3G18860 26.702 1.19e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01762 - - aprc:113874855 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01762 11 42295397 42296918 Cca11g01762 11 42295397 42296918 ECH