Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g01760 | ATGGCGAAAGCTTCGAAGACGCAAGAGGAGATTGCGAATGAAGCTATCAAACACGCTTTGAAGGCTCTGCGGAAGCGCCATTTGCTCGAAGAAGCCGCTCATGCTCCCGCTGTTCTAGCTCTTTCCAAACCCATCGCTTCTCAGAGCTCTGAGTGGAAAGAGAAAGCAGAAAATCTTCAAGTGGAGCTTCAGCAATGCTACAAAGCTCAATCTCGCTTGTCTGAGCAGCTTGTTGTGGAAGTAGCTGAGTCCAGGGCTTCGAAAGCGTTGGTTCAAGAGAAGGAAAACGCAGTGGCTGATCTGCAAAAGGAGTTGACCGAATTGAGGGACGAGTGCTCTCAATTGAAGGCTGACTTGGAAGAGAAGATTAAATCCCTAGAACTGGTTGTCAGTGAAAATTCTGAACTCAAAGCACATCTGGAGGAGATGACTGCTAAGGCCAATAAAGCTGAATCTGAAAATAAGATGTTGATTGACCGATGGATGTTGGAAAAGATGAAAGATGCTGAACGCCTAAATGAGGCCAATGCACTGTATGAAGACATGGTCCAGAAACTAAAGGCCAGTGGTTTAGAACAACTTGCAAGGCAGCAGGTGGATGGTATAGTTCGCCGAAGTGAAGAAGGTGCTGAGTTTTTTTTAGAGTCAAACATCCCTTCCACATGCAAATACAGGCTACGTGCACACGAAGGTGGTTGTGCTGCTATGTTGTTTGAATACAATTCCGGTAAATTGATTACTGGGGGACAGGATCGGTCAGTTAAAATGTGGGATACAAATACAGGATCCTTAAGCTCTACTCTTCATGGCTGCCTTGGCTCAGTATTGGATCTCTCAATCACCCATGATAATAGATCTGTCATTGCTGCAAGCAGCTCAAACAACTTGTTTGTATGGGATGTCAGCTCAGGCCGGGTCCGTCACACCCTTACAGGCCACACAGATAAAGTTTGTGCTGTTGATGTCAGCAAGGTTTCAAGTCGTCATGTTGTCAGTGCTGCTTATGATCGTACCATAAAAGTTTGGGATTTGATGAAAGGTTACTGCACAAACACAATCATTTTTCACAGTAACTGCAATGCTCTTTCCTTTAGCATGGATGGTCAGACCATATTTTCAGGACATGTTGATGGTAATCTTCGGCTATGGGACATTCAGAGTGGAAAGTTACTCAGTGAGGTTGCTGCACATTCACTTGCGGTCACATCAATATCTCTCTCTCGAAATGGAAATGTTGTAGTGACCAGTGGAAGGGACAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGCGGCACGTTAAGAGCCTCGGGAAACAGAGTGGCTTCCAATTGGAGTCGCTCCTGTATTAGCCCAGATGACAATCACGTTGCTGCTGGGTCTGCTGATGGATCTGTCTATATTTGGTCAATATCTAAAGGTGATATAGTCAGTACTTTGAAGGAACATAGTTCTTCTGTTCTGTGTTGTAGGTGGAGCGGGATTGGAAAACCCCTAGCTTCAGCTGACAAGAATGGGATTGTTTGCGTTTGGACATAA | 1545 | 0.4492 | MAKASKTQEEIANEAIKHALKALRKRHLLEEAAHAPAVLALSKPIASQSSEWKEKAENLQVELQQCYKAQSRLSEQLVVEVAESRASKALVQEKENAVADLQKELTELRDECSQLKADLEEKIKSLELVVSENSELKAHLEEMTAKANKAESENKMLIDRWMLEKMKDAERLNEANALYEDMVQKLKASGLEQLARQQVDGIVRRSEEGAEFFLESNIPSTCKYRLRAHEGGCAAMLFEYNSGKLITGGQDRSVKMWDTNTGSLSSTLHGCLGSVLDLSITHDNRSVIAASSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLMKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGNVVVTSGRDNLHNLFDVRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEHSSSVLCCRWSGIGKPLASADKNGIVCVWT | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g01760 | 514 | Coils | Coil | 84 | 160 | - | - | |
| Cca11g01760 | 514 | Pfam | Autophagy protein 16 (ATG16) | 45 | 173 | IPR013923 | - | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 226 | 267 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 482 | 514 | - | - | |
| Cca11g01760 | 514 | PANTHER | AUTOPHAGY-RELATED 16, ISOFORM F | 8 | 514 | - | - | |
| Cca11g01760 | 514 | SUPERFAMILY | WD40 repeat-like | 217 | 513 | IPR036322 | GO:0005515 | |
| Cca11g01760 | 514 | CDD | WD40 | 222 | 513 | - | - | |
| Cca11g01760 | 514 | Pfam | WD domain, G-beta repeat | 349 | 384 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | Pfam | WD domain, G-beta repeat | 306 | 343 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | Pfam | WD domain, G-beta repeat | 222 | 258 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | Pfam | WD domain, G-beta repeat | 451 | 472 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | Pfam | WD domain, G-beta repeat | 477 | 513 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | Gene3D | - | 357 | 514 | IPR015943 | GO:0005515 | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 453 | 481 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 371 | 385 | IPR019775 | - | |
| Cca11g01760 | 514 | Coils | Coil | 169 | 189 | - | - | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 394 | 429 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 310 | 344 | - | - | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 268 | 309 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 310 | 352 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 346 | 384 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 261 | 300 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 387 | 426 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 429 | 472 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 219 | 258 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 303 | 343 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | SMART | WD40_4 | 475 | 514 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 226 | 263 | - | - | |
| Cca11g01760 | 514 | Gene3D | - | 90 | 162 | - | - | |
| Cca11g01760 | 514 | Gene3D | - | 215 | 356 | IPR015943 | GO:0005515 | |
| Cca11g01760 | 514 | PRINTS | G protein beta WD-40 repeat signature | 245 | 259 | IPR020472 | - | |
| Cca11g01760 | 514 | PRINTS | G protein beta WD-40 repeat signature | 330 | 344 | IPR020472 | - | |
| Cca11g01760 | 514 | PRINTS | G protein beta WD-40 repeat signature | 371 | 385 | IPR020472 | - | |
| Cca11g01760 | 514 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 330 | 344 | IPR019775 | - | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 482 | 514 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 245 | 259 | IPR019775 | - | |
| Cca11g01760 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 361 | 393 | IPR001680 | GO:0005515 | |
| Cca11g01760 | 514 | PANTHER | AUTOPHAGY PROTEIN 16-LIKE | 8 | 514 | IPR045160 | GO:0000045 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g01760 | Cca-Chr11 | 42267382 | 42270222 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g01760 | 285 | 499 | Miscellaneous Gene Families | AT5G08390 | 23.611 | 8.03e-16 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g01760 | K17890 | - | gmx:100778336 | 954.125 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca11g01760 | 11 | 42267382 | 42270222 | Cca11g01760 | 11 | 42267382 | 42270222 | ECH |