Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01754 ATGGCTTCGCAGGAAAATGGTCGACCATTGCCAAAATTCGGGGAGTGGGATGTGAATAATCCTGCCTCAGCCGAAGGCTTTACTGTGATATTCAATAAGGCTAGAGATGAGAAGAAGACTAACAGTGGACTCAACATGACAAACCCACGTAGATCTGATCCTCTCGCCAAGACTCACACTTATAACGATTCTCAATATTCTGCAAAGAAAAAGTGGTTTTGCTGCGGCTGA 231 0.4459 MASQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNSGLNMTNPRRSDPLAKTHTYNDSQYSAKKKWFCCG 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01754 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
Cca11g01754 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 75 IPR040387 -
Cca11g01754 76 MobiDBLite consensus disorder prediction 38 58 - -
Cca11g01754 76 MobiDBLite consensus disorder prediction 41 58 - -
Cca11g01754 76 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01754 Cca-Chr11 42164864 42165324 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01754 - - gmx:100811925 132.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01754 11 42164864 42165324 Cca11g01754 11 42164864 42165324 ECH