Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01751 ATGGAAGGAGAAGAGGGGTCTCAGCAGCCACAGTTGGTGCTCGCCGACAAGCTATTCCTCCTCCGACAACCCGATGTGCAAGACATTGACAAAGTTCGCTACAAAGAGGATGTTTTCACTCACGTTAAGGAAAACGATATGGTGCCTTTGTACGAAACCCTAATAGCAGACTCTGTGTTGGACATGGATCGTGCCCTTTTGGACTCCATGCGCGCTAAAATTGACGAAGAGCTCAACAAGCTCGACGAAAAGATTGCTGATGCTGAGGAAAACTTGGGTGAGAGTGAAGTTCGAGAGGCTCACTTGGCAAAATCCTTGTTTTTCATCCGGATTGGGGACAAGGAGAAAGCCTTGGAACATCTCAAGGTAACAGAAACCAAGACAGTTGCAGTTGGCCAGAAGATGGACCTGGTGTTTTACACATTGCAGCTTGGTTTCTTTGACATGGATTTTGATCTCATTTCTAAAAGCATTGACAAAGCCAAAAACTTGTTTGAAGAAGGTGGTGATTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGTCTGTTCTGCATGTCCACTCGAAATTTCAAGAAGGCTGCCAAGTTGTTTTTGGATTCTATATCAACCTTTACAACCTATGAACTTTTTCCCTATGACACCTTTATATTTTATACGGTTTTGACAAGCATTATATCATTGGATAGGGTTTCCTTAAAGCAAAAGGTAGTAGATGCTCCAGAGATCTTAACAGTGATTGGCAAAATCCCATATCTTTCAGAGTTTTTGAACTCCTTGTATGATTGCCAATACAAGTCTTTCTTCTCAGCATTTGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATTTGCATCCCCACTTCAGATATTACATGAGGGAGGTCAGAACAGTTGTTTATTCCCAATTTTTGGAATCCTATAAGAGTGTGACAATTGAGGCCATGGCAAAAGCCTTTGGAGTGACAGTGGATTTTATTGACGTGGAGCTATCACGTTTCATTGCAGCAGGGAAACTTCATTGCAAGATTGATAAAGTTGCAGGTGTTCTTGAAACTAACCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACTATTAAGCAAGGGGACTTCCTATTGAACAGGATCCAGAAATTGTCTCGTGTGATTGATCTTTAG 1161 0.4238 MEGEEGSQQPQLVLADKLFLLRQPDVQDIDKVRYKEDVFTHVKENDMVPLYETLIADSVLDMDRALLDSMRAKIDEELNKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKVTETKTVAVGQKMDLVFYTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLFCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01751 386 Coils Coil 67 98 - -
Cca11g01751 386 Pfam PCI domain 254 354 IPR000717 -
Cca11g01751 386 SMART PINT_4 287 370 IPR000717 -
Cca11g01751 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Cca11g01751 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Cca11g01751 386 PANTHER 26S PROTESOME SUBUNIT 6 3 386 IPR019585 -
Cca11g01751 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 - -
Cca11g01751 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
Cca11g01751 386 Gene3D - 25 337 - -
Cca11g01751 386 PANTHER BNAC08G11800D PROTEIN 3 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01751 Cca-Chr11 42140066 42144880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01751 K03037 - gmx:100810692 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01751 11 42140066 42144880 Cca11g01751 11 42140066 42144880 ECH