Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01739 ATGGACCTGGGAACCTATGGCAATCCTACACCAGCAGAGAAAAAGATCGACTCTTACTATGATGTGCCAGAAGGAGTGGATATTCGTGGAAGATACGATGAAGAGTTTGCAAAAATCCTCACAAAAGATGCTCTGAAGTTCGTTGCTGACCTGCAACGTGAGTTCAGGAACCATATCAAGTATGCATTAGAGTGCAGAAGAGAGGCAAAGAGGAGGTACGATGAAGGGGCTGTGCCAGGGTTTGATCCTGCTACTAGGCACATAAGAGAGCATGAGTGGGTATGTGCACCTGTTCCACCAGCTGTTGCTGATAGGAAAGTGGAGATCACTGGCCCTGTTGACAGAAAAATGATCATCAATGCTCTCAACTCTGGAGCTAAAGCCTTTATGGCTGATTTTGAAGATGCACTGTCACCGAGCTGGGAAAATCTTATGAGAGGGCAAGTGAACTTGAGGGATGCTGTGGCTGGGACCATAAGCTTCCATGACAAGGTCAGAAACAGGGTTTACAAGCTCAATGATCAGACAGCAAAGCTTTTTGTGAGAGTAAGAGGTTGGCACCTACCCGAGGCACATATTCTGATTGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTACTTCTACCACAATCACTCAACATTCCGGCGCACTCAAGGTGCTGGCTTTGGCCCTTTCTTTTACCTTCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAACAGCGTGTTTGAGAAGGCTGAGAATGTAGCAGGCATCGAAAGAGGAAGCATCAGAGCAACTGTTCTGATAGAAACACTTCCTGCGGTGTTTCAAATGGATGAAATTCTGTATGAGCTGAAGGATCACTCGGCGGGTCTGAACTGTGGGCGTTGGGATTACATTTTCAGTTATGTCAAGACCTTCCGGGCTCACCCTGATCGCCTGCTACCAGACAGGGTCCAGGTTGGCATGACTCAACACTTCATGAAGAGTTACTCCGATCTCCTCATTAGAACGTGTCATAGACGCGGTGTGCATGCTATGGGAGGAATGGCAGCACAGATTCCAATCAAAGATGACCCAGTGGCTAACGAGGCAGCACTGGAGCTTGTGAGGAAGGACAAGCTAAGAGAAGTGAAGGCAGGGCACGACGGGAGTTGGGCAGCACACCCTGGTCTGGTTCCAGCATGCATGGAGGTTTTCGACAACAACATAGGCAATGCTCCGAACCAGATAAAGACAGCAAAACGCGAAGACGCTGCAAACATAACCGAACAAGACCTCTTGCAGATACCAATAGGAGGCCGAAGCATGGAAGGCCTGAGACTAAACACAAGGGTGGGAATTCAGTACATGGCAGCATGGCTGAGTGGAACAGGTTCGGTGCCTCTCTACAACCTCATGGAAGATGCTGCCACTGCTGAGATCAGCAGGGTGCAGAACTGGCAGTGGCTCAAGTATGGAGCGGAACTAAATGGGGATGGGGTTGGAGTGAAAGTGAGCAAAGAACTCTTTGGTAGAGTGGTTGAAGAAGAGATGGGTAGGATTGAAAAGGAAGTGGGGACAGAGAGGTTCAATAAGGGAATGTACATGGAGGCTTGCAAGATCTTCACTCGGCAATGCACGTCGCCAACGCTTGATGATTTTCTCACTCTCGAGGCCTATAATTACATAGTAGAGCATCACCCCAGCGAATCATCAAAGCTTTGA 1704 0.4847 MDLGTYGNPTPAEKKIDSYYDVPEGVDIRGRYDEEFAKILTKDALKFVADLQREFRNHIKYALECRREAKRRYDEGAVPGFDPATRHIREHEWVCAPVPPAVADRKVEITGPVDRKMIINALNSGAKAFMADFEDALSPSWENLMRGQVNLRDAVAGTISFHDKVRNRVYKLNDQTAKLFVRVRGWHLPEAHILIDGEPATGCLVDFGLYFYHNHSTFRRTQGAGFGPFFYLPKMEHSREAKIWNSVFEKAENVAGIERGSIRATVLIETLPAVFQMDEILYELKDHSAGLNCGRWDYIFSYVKTFRAHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKDDPVANEAALELVRKDKLREVKAGHDGSWAAHPGLVPACMEVFDNNIGNAPNQIKTAKREDAANITEQDLLQIPIGGRSMEGLRLNTRVGIQYMAAWLSGTGSVPLYNLMEDAATAEISRVQNWQWLKYGAELNGDGVGVKVSKELFGRVVEEEMGRIEKEVGTERFNKGMYMEACKIFTRQCTSPTLDDFLTLEAYNYIVEHHPSESSKL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01739 567 PANTHER MALATE SYNTHASE 19 567 IPR006252 GO:0004474|GO:0006097
Cca11g01739 567 ProSitePatterns Malate synthase signature. 285 300 IPR019830 GO:0004474|GO:0006097
Cca11g01739 567 Gene3D Malate synthase, domain III 434 557 IPR044856 -
Cca11g01739 567 PANTHER MALATE SYNTHASE 19 567 - -
Cca11g01739 567 PIRSF Malate_synth 17 558 IPR006252 GO:0004474|GO:0006097
Cca11g01739 567 TIGRFAM malate_syn_A: malate synthase A 39 556 IPR006252 GO:0004474|GO:0006097
Cca11g01739 567 Gene3D Malate synthase, domain 3 22 432 IPR046363 -
Cca11g01739 567 Pfam Malate synthase 27 557 IPR001465 GO:0004474|GO:0006097
Cca11g01739 567 SUPERFAMILY Malate synthase G 18 559 IPR011076 GO:0003824
Cca11g01739 567 CDD malate_synt_A 39 557 IPR006252 GO:0004474|GO:0006097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01739 Cca-Chr11 41978017 41981831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01739 K01638 - gmx:732628 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01739 11 41978017 41981831 Cca11g01739 11 41978017 41981831 ECH