Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01734 atggtgagaggagaagcagaGGCAGTGGTGGCGTGCAGCGACAAGAGCATGAAAATTGGGGCCACGATGTGGGACTTGGAAACGGGAGAAAAACTGCTTCACATACCAACCTGTGCCTCGCCACCTTTCGGCTTCTTGTGCTTGAGAAACCGTTTCCTCGTCGCATCTCAAATTAACAAACACGGCTCTATCGGCGATGGAGCCATTCTAGTTTGGCCCTTCAACAAGCCTCAACAACCACTTTTGAATTACACAGTGGAGGCTGTTGGACCACTTTGTTGTACAAATGATGGCATATACCTTGTTGGAGGAGCTCTGTCAGGAATTGCTTATCTTTGGAATGTGACCAACGGAAAATTATTGAAGACTTGGAGAGCTCATAATAAATCTTTAAACTGTATGGCATTTTCAGATGATGATTCTTTTCTTATTTCCAGTTCAGTTGATGGCACGATCTGTGTTTGGTCTATGATTAGTTTGTTAGACATAGAAGAAACAACAAGCTCGCCACCTTCATTACATTGTTTGTCAGGACACACGTCATCCATAACAGGTCTTTTAACTATACCGAACTCAATATTAGTATCAAGCTCCCTTGATGGTACATGCAAGGTTTGGGATTTTATCTACGGAAGGCTCGTGCAAACTCAAGTTTATCTTTTTGCAATAACCTCCATCACCCTCCACCAAAGAGAAAGACTTTTGTTTTGTGGAATGGAAAATGGAACAATAATTGTCAACAAGCTTGACATTGGTTTGAAAGAAGGTCCTTCCATGGGTACAGTAGCTCAACCACTTGAATTGAAAGGACAAAACGGAGCCATTAGTGCCTTAACATGCTCTCGAGCATGCCTAATATCTGCCTCTGAAGATTGCACGATCTATATTTGGGATATCTTCAACTGGGAAGTCATTCATAGGTTTAATCTTCAAAAAGCAGGGAAAGTAACTAATCTTGTGATAGTTTCACGGTCCGCATTGGTTTCTGCATCAAAGTACGAGACAGTTTCCAATAAGTATTATGTTTCTCCACTTGACAAGTATCCTCAGTTGATTAACTCATTCAAGGGAACTACTACTCTTCTTTCCTTGTGCCCACTCCACAAAGGAAACCAAACTTGCATTGATTTGAGAAGTAGTGATTTATCAAGACAGAAGATTTCAAGTTCACAGAAAGCAGATGTGCCTATGTCCATGACCATACAAATGAAAGTGGAAACAAGTATCAAGAATCATGTATTGGCGACAAATATGGCAGAGCATGTTACAGTGATAAACAAACAGTTGCAATCACAACTATTGAACTTTATACAACACAGATTGTTATGTCCAAACATCATCAACACACATAAAACTAGAAGAAAAAAACTCAAAATTCAAAGTTTGGTACGGGAAGAGAAAAATCTAAAGCCATAG 1416 0.3948 MVRGEAEAVVACSDKSMKIGATMWDLETGEKLLHIPTCASPPFGFLCLRNRFLVASQINKHGSIGDGAILVWPFNKPQQPLLNYTVEAVGPLCCTNDGIYLVGGALSGIAYLWNVTNGKLLKTWRAHNKSLNCMAFSDDDSFLISSSVDGTICVWSMISLLDIEETTSSPPSLHCLSGHTSSITGLLTIPNSILVSSSLDGTCKVWDFIYGRLVQTQVYLFAITSITLHQRERLLFCGMENGTIIVNKLDIGLKEGPSMGTVAQPLELKGQNGAISALTCSRACLISASEDCTIYIWDIFNWEVIHRFNLQKAGKVTNLVIVSRSALVSASKYETVSNKYYVSPLDKYPQLINSFKGTTTLLSLCPLHKGNQTCIDLRSSDLSRQKISSSQKADVPMSMTIQMKVETSIKNHVLATNMAEHVTVINKQLQSQLLNFIQHRLLCPNIINTHKTRRKKLKIQSLVREEKNLKP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01734 471 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Cca11g01734 471 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Cca11g01734 471 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Cca11g01734 471 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Cca11g01734 471 SMART WD40_4 210 248 IPR001680 GO:0005515
Cca11g01734 471 SMART WD40_4 77 114 IPR001680 GO:0005515
Cca11g01734 471 SMART WD40_4 261 298 IPR001680 GO:0005515
Cca11g01734 471 SMART WD40_4 169 207 IPR001680 GO:0005515
Cca11g01734 471 SMART WD40_4 117 156 IPR001680 GO:0005515
Cca11g01734 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 157 - -
Cca11g01734 471 Gene3D - 3 219 IPR015943 GO:0005515
Cca11g01734 471 Pfam WD domain, G-beta repeat 118 156 IPR001680 GO:0005515
Cca11g01734 471 Pfam WD domain, G-beta repeat 173 207 IPR001680 GO:0005515
Cca11g01734 471 Pfam WD domain, G-beta repeat 268 298 IPR001680 GO:0005515
Cca11g01734 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 216 IPR001680 GO:0005515
Cca11g01734 471 Gene3D - 220 446 IPR015943 GO:0005515
Cca11g01734 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 207 - -
Cca11g01734 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Cca11g01734 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 157 IPR001680 GO:0005515
Cca11g01734 471 PANTHER WD-REPEAT PROTEIN 18 6 461 IPR045227 -
Cca11g01734 471 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 6 461 - -
Cca11g01734 471 SUPERFAMILY WD40 repeat-like 65 336 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01734 101 206 Acyl Lipid Metabolism Gene Families AT3G18860 27.068 2.57e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01734 K14829 - gmx:102662801 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01734 11 41897570 41909677 Cca11g01734 11 41897570 41909677 ECH