Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01727 ATGGCGGATCCGATTCCGGCGCCACCAAGATCCGCCACGGACCTCTTCTCCGATCCACTCGACGCCCACCCGCTGTGGTTCAAACCGGCGTCGTTTCTCTCCCCGGACTTCGACTCCGAATCCTACATTTCGGAGCTCCGAACCTTCGTCCCCTTCGACACGCTCCGTTCGGAGCTCAACAACTACCTCTCTTCTCTCAACCACGAGCTCATCGACCTCATTAACCGCGACTACGCCGATTTCGTCAACCTCAGCACCAAGCTCGTCGACGTCGACGCCGTCGTGGTTCGTATGCGCGCGCCGCTCGTGGAGCTCCGGGAGAAGATCGAGCAGTTTAGAGGATCCATCGAGGTTTCGCTTGTCGCCATTAAGAACCGCTTGAAGCAGAGATCTGAGGTGGCCTCCGCTAGAGAGACTCTGGAGCTTCTTCTCGACACGTTTCACGTCGTTTCTAAGGTTGAGAAGCTGATAAAAGAGTTACCTAGTGTACCCACCGATTGGTCAAATGGAGATGTAAATTTGTCAGAGAGGAATAACTTGAGCAATGGAGTTTCTGTGCAGCATGTTGAGAATGAGACAAGTATCAGAGAGACTCAAAGCATGCTGCTGGAAAGAATTGCCAGTGAGATGAATCGACTAAAGTTCTATGTTACACATGCAAAGAACCTTCCTTTTATTGAGAATATGGAGAAGAGGATTCAAAATGCAAGCCTAACAGTAGATGCAAGCTTGGGACATTGCTTTGTAAATGGTTTGGAGCACCGGGATGCAACTGCAATTTACAATTGCTTACGTGCCTATGCTGCCATAGATAACACCAAGAATGCTGAAGAAATTTTTCGACTTACTGTTGTGGCTCCATTGATACAGAAGATTATCCCACATGGATCATCGGCTGTGGTTGCTGGATCATCTGGGGATGGTCTTGAAAATGATTATCAACTAATTAAGGAGTGCATTGATAAAGATTGTAAATTTTTATTGGAAATTACTTCAGCTGAAAATTCAGGTTTGCATGTCTTTAACTTCTTAGCCAATTCTATCCTTAAAGAGGTTCTCTCTGCAATTCAGAAGGGAAAACCAGGTGCATTTTCTCCTGGAAGACCAACAGAGTTCTTGAAAAATTACAAATCAAGCTTAGATTTCTTGGCTTATCTAGAAGGTTACTGTCCATCCAGATCTGCTGTTGCTAAATTTCGATCTGAAGCAATTTATAATGAATTCATGAAGCAATGGAATATTGGAGTATATTTCTCTTTGAGGTTTCAGGAAATAGCAGGATCTCTAGATTCTGTGCTTACAACATCCAGCCTTATCCCTGTTCAAAATTCAGATGCTGGTGAAGCAAATTATCAAGGTTTAACATTAAAGCAAAGTGTTACTCTGTTGGAGAGTATGAGATCATGCTGGAGAGAAGATGTTCTTGTCCTTTCTTGTTCTGACAGATTCCTTCGGTTATCCTTGCAGCTTCTTTCTAGATACTCACATTGGCTCTCATCTGGACTGACTGCTCGCAAGAACCATAACACAAGCACAAGCTCTGGGTGTGAATGGGCTGTTTCAGCTGTCATAGATGACTTCATTTTTGTTATTCACGATATAAGATATTTGGAGGAGCAGGTTCGTGGTGATTACCTACAACATGTGCTTCAGCTTTTATCTTCATGTTCCCCTGATGTTCTGGAATCAATAAGGCAGAGCATTTTACTGAGTGGTCAATCATTAAAATCTTTAGAACCTTTTGTCATTAAAGCAGTGGTGGAGTCACTTGTGGAAAAGTCAGTTGAGGACTTGAGACAAATGAAGGGGATAACGGCAACCTATAGGATGACCAATAAACCTCTTCCTGTGAGGCATTCACCATATGTTTCAGGGGTATTACGGCCCCTTAAGGCATTTTTGGATGGGGAAAGAGCTACAAGATTTTTGGCCAGTGAAACCAGGAATGAAATACTCCTTTATGCTGCAACTGAGATTACTGACCGTTATCATGAATTAGCTGCTGACCTTGTTAGCGTGGCAAGAAAGACAGAGTCTTCGCTCCAGAAAATTAGGCAGAGTGCACAAAGACGAGCTGGAGCAAGTTCAGATATCTCTGATAATAACGTGTCTGACACCGATAAAATCTGTATGCAGTTGTTCCTTGATATTCAGGAGTATGCCCGTAACCTCTCTGCCCTGGGGATTGAAGCAGTCAATATTGCATCCTACCGTTCATTATGGCATTGTGTGGCTCCTGCAGATAGGAAAAATGCAATTAGTCTCTAA 2268 0.4387 MADPIPAPPRSATDLFSDPLDAHPLWFKPASFLSPDFDSESYISELRTFVPFDTLRSELNNYLSSLNHELIDLINRDYADFVNLSTKLVDVDAVVVRMRAPLVELREKIEQFRGSIEVSLVAIKNRLKQRSEVASARETLELLLDTFHVVSKVEKLIKELPSVPTDWSNGDVNLSERNNLSNGVSVQHVENETSIRETQSMLLERIASEMNRLKFYVTHAKNLPFIENMEKRIQNASLTVDASLGHCFVNGLEHRDATAIYNCLRAYAAIDNTKNAEEIFRLTVVAPLIQKIIPHGSSAVVAGSSGDGLENDYQLIKECIDKDCKFLLEITSAENSGLHVFNFLANSILKEVLSAIQKGKPGAFSPGRPTEFLKNYKSSLDFLAYLEGYCPSRSAVAKFRSEAIYNEFMKQWNIGVYFSLRFQEIAGSLDSVLTTSSLIPVQNSDAGEANYQGLTLKQSVTLLESMRSCWREDVLVLSCSDRFLRLSLQLLSRYSHWLSSGLTARKNHNTSTSSGCEWAVSAVIDDFIFVIHDIRYLEEQVRGDYLQHVLQLLSSCSPDVLESIRQSILLSGQSLKSLEPFVIKAVVESLVEKSVEDLRQMKGITATYRMTNKPLPVRHSPYVSGVLRPLKAFLDGERATRFLASETRNEILLYAATEITDRYHELAADLVSVARKTESSLQKIRQSAQRRAGASSDISDNNVSDTDKICMQLFLDIQEYARNLSALGIEAVNIASYRSLWHCVAPADRKNAISL 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01727 755 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 7 754 IPR009316 GO:0007030|GO:0015031|GO:0016020
Cca11g01727 755 Pfam COG (conserved oligomeric Golgi) complex component, COG2 25 156 IPR024602 -
Cca11g01727 755 PANTHER BNAA01G14200D PROTEIN 7 754 - -
Cca11g01727 755 Pfam COG complex component, COG2, C-terminal 589 717 IPR024603 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01727 K20289 - gmx:100817096 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01727 11 41824331 41830303 Cca11g01727 11 41824331 41830303 ECH