Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01726 ATGGTTTCGACGAGGCGCAGTGGATCTCTCTCTGCCAACAATAGCAAAAGATCTTCATCTTCCGAAGATAAACCTCCTTCGCCCAAGCGTCAAAAGGTCGACAATGGCGCTTCGTCGGAGAAACCGCTGCCGCCGCCGGAGAATTCCAAGGATTTATTTACTCCGGAGCCTGTGCCTGATCCCGGAGAATGTGGCTCCGGCGATGCTCAGATCGCCGGAGCGCCTGCCGCCGATGGAGTGAACTCCGCCGAGGGTGACGCTACGCCGGCCGTGCCTGTGACGGCACCGATTGCTGATGCCGCATGTCTGTCGTTCTCTTCGCGGAGTATTTATCAGAAACAGAATCCGACTATCGAAGGAGGACCGTGGTGCAGGTTCTTGTCGCAGTCTGCTCAGAATCCTAATGTTGCTGTATGCACACCCAATTTCACGATTGGTTCTAATAAAAATTGCAGCTTTCAACTGAAGGATCAAACTCATCAAACAATAAGTGGAAATTTATGCAAGATCAAACATACGCAGCGCGAAGGAAGTGCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGGACTGTGCTAGTAAATGGGACCCACGTCAAGAAGAGTACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATATTGAGGCTGCTGTTAGGGGTGCAGAAGTTCAAAGTGGTGTTGGGAAATTTCTGCAGCTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTAGCTGGGGCCTCTATTTTGGCTTCCCTTTCTAACATCAGACAGGATCTTACCAGATGGAAATCTCCATCTCAGACCTCCAGTAAGCCTACCCAGGGTACCAATGTCTCTAGTCATTCTGTTGTTAATGATTGCACAGAAATTGAGCTTGATGGCTCAGAATCAGCTCCAAATGTGCGGAGTGATAAAGCAGCTGATGTTCAAACAAGTGACAAGAATTCAACAATAGATTGCGATCCAGAGGCTGGTGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTGTTGGAAGAAAGAAATGGGACGCTGGATATGCAGGCTGCATCGACTTTGGGTACATCTGTGCGCTGTGCAGTTTTTAAAGAAGATGTTCATGCTGCAATACTGGATGGAAAAGAGATAGATGTTTCTTTTGACACCTTCCCCTACTATTTAAGTGAGAATACAAAAAATGTTCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCAGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCGAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTTAATGTTGAAAAATCCTTCAGTTGCACTAAACAAAGTCCTACAGCCACAGATGTGGCTAGGATCATGGACCCAATAGCTAGTGAAACAGAGATACCTAGCTCTTCAAATGCACCTACATCAGGTGGTCTTGAGTCTCAACCTAAGTTGGAAACTGATAACATGCCTTCCACCTCTGGGACAACTAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGTGTATATCAGACATCTTCAAGGGGACCATCTAATGGAAGTCGGGGGAAGGTTGTCTTACTGTTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCAATACCTGATGGAGTTGATCTTGGTGGCGCTTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGCAGAAGTGCGCCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCATATTCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTCGTAATAGGTTCACACACTCAAAATGACAGCCGCAAGGAGAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGTCCCGAAACCAAATAGAACTTTGACTAAGCTTTTCCCTAATAAAATTACAATTCACATGCCACAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCAATTGCGCACAGTTTTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTATGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAAAAGATAATTGGTTGGGCTCTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGTATTATCGTGTGACAGCATTCAATATGGAATTGGGATCTTACAGTCAATCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTAGCTGATGTTATTCCTCCTAGTGACATTGATGTAACTTTTGATGATATCGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTGCAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACTGGTAAAACAATGCTCGCAAAGGCAATTGCTACTGAAGCTGGTGCTAACTTCATTAACATTTCTATGTCAAGCATTACATCTAAGTGGTTTGGCGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGCTGGGTCGGAGGGAAAACCCAGGGGAGCATGAAGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACGAAGGATACTGAGCGAGTTCTTGTGCTGGCTGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTCATAAGGAGGATGCCTAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATACTGTCAAAAGAAGAATTGTCTCCCGATGTTGATTTGGATGCTGTTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTAGCAGAAGGTCAACCAGCTCCAGCATTATGCAGCAGTGGGGATGTCAGATCTTTGAACATGGAAGACTTCAAACACGCTCATCAACAGGTATGTGCAAGTGTTTCTTCCGAATCAGTAAATATGACCGAGCTTTTACAATGGAATGAACAATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3696 0.4315 MVSTRRSGSLSANNSKRSSSSEDKPPSPKRQKVDNGASSEKPLPPPENSKDLFTPEPVPDPGECGSGDAQIAGAPAADGVNSAEGDATPAVPVTAPIADAACLSFSSRSIYQKQNPTIEGGPWCRFLSQSAQNPNVAVCTPNFTIGSNKNCSFQLKDQTHQTISGNLCKIKHTQREGSAVAVLESTGSKGTVLVNGTHVKKSTSCVLNSGDEVVFGVLGNHSYIFQQLNIEAAVRGAEVQSGVGKFLQLERRSGDPSAVAGASILASLSNIRQDLTRWKSPSQTSSKPTQGTNVSSHSVVNDCTEIELDGSESAPNVRSDKAADVQTSDKNSTIDCDPEAGAEAGNVKLSGVNDFLRPFFRILAQPSCKLKLSKSICKQVLEERNGTLDMQAASTLGTSVRCAVFKEDVHAAILDGKEIDVSFDTFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNVEKSFSCTKQSPTATDVARIMDPIASETEIPSSSNAPTSGGLESQPKLETDNMPSTSGTTKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSYSFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHQLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCDSIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILSKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGQPAPALCSSGDVRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNEQYGEGGSRVKKALSYFM 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01726 1231 CDD FHA 143 226 IPR000253 GO:0005515
Cca11g01726 1231 Gene3D - 925 1206 IPR027417 -
Cca11g01726 1231 CDD AAA 965 1098 - -
Cca11g01726 1231 MobiDBLite consensus disorder prediction 544 576 - -
Cca11g01726 1231 SMART AAA_5 963 1100 IPR003593 -
Cca11g01726 1231 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 80 1231 - -
Cca11g01726 1231 Pfam FHA domain 144 216 IPR000253 GO:0005515
Cca11g01726 1231 MobiDBLite consensus disorder prediction 277 297 - -
Cca11g01726 1231 Gene3D - 122 234 - -
Cca11g01726 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1207 IPR027417 -
Cca11g01726 1231 Coils Coil 887 907 - -
Cca11g01726 1231 Gene3D - 1099 1193 - -
Cca11g01726 1231 MobiDBLite consensus disorder prediction 1 87 - -
Cca11g01726 1231 Pfam AAA+ lid domain 1120 1155 IPR041569 -
Cca11g01726 1231 MobiDBLite consensus disorder prediction 310 340 - -
Cca11g01726 1231 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 80 1231 - -
Cca11g01726 1231 MobiDBLite consensus disorder prediction 320 334 - -
Cca11g01726 1231 ProSitePatterns AAA-protein family signature. 1070 1089 IPR003960 GO:0005524|GO:0016887
Cca11g01726 1231 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g01726 1231 Pfam ATPase family associated with various cellular activities (AAA) 967 1096 IPR003959 GO:0005524|GO:0016887
Cca11g01726 1231 MobiDBLite consensus disorder prediction 22 36 - -
Cca11g01726 1231 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01726 Cca-Chr11 41804524 41817346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01726 926 1174 Calmodulin-binding Proteins AT3G56690 39.453 1.81e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01726 - - gmx:100816731 2179.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01726 11 41804524 41817346 Cca11g01726 11 41804524 41817346 ECH
Cca11g01726 11 41804524 41817346 Cca03g00339 03 5277211 5291705 PCT