Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01701 ATGCTCAAGATATCCCCAACCTCTAGTTTCTGTGAAAGGAATGAGGGTGACCAAAATAGGCAAGTACAAGTAGAAGAGGAGCCCAACATGTTCACCACTTTGATCCCCGAATCCCCAACATGTGAATCCCATAATAACACCACCCATTTGTCCCTAGCTGTCAACGAAGCCAAATGCATATTCAACATATCCTTCTCCATGGTCCTAACAGGCCTCTTACTCTATTCCCGCTCCATGATCTCCATGCTCTTCCTCGGCCACCTCGGAGACCTCGCTCTCGCAGGTGGCTCCTTAGCCATCGGTTTCGCCAACATCACCGGCTATTCCATTCTCTCTGGCCTCGCCATGGGCATGGAACCCATCTGCGCTCAAGCCTTCGGAGCTAAACGCTTCAAACTCCTCGGTCTCACCATGCAGAGAGCCGTGCTCCTCCTCCTCCTAACTTCACTCCTCATCTCATTCTTCTGGCTCAACATGAACAAAATATTGCTCCTTTGTGGCCAACAACAAGACATAGCCAATGAAGCACAAAGTTACATAATTTACTCTCTCCCTGATCTTATATTACAATCGCTGCTTCACCCTCTTCGAATCTACCTCCGAAGCCAATCCATAACACTCCCTCTCACGTGCTGCGCCGCCTTATCTATCCTCCTCCACGTGCCCATCAATTACCTCCTCGTATCCGTGCTCAACCTCGGAATCAAAGGCATCGCGTTAAGCGCGGTCCTCACAAATTTCAACCTCGTGGCGTCCTTGGTTGTTTATATAATCCTCTCGGGCACGCACAAGAAAACGTGGCCGGGTTTTTCCTCGGGGTGCTTCAAGGGGTGGAGAACGCTCGTGAATCTCGCGGTTCCGAGTTGCGTTTCGGTGTGTCTGGAATGGTGGTGGTACGAGATTATGATATTGCTATGCGGGGTGTTGGTGAATCCCCATGCAAGTGTTGCGTCTATGGGGGTTTTGATTCAAACCACCGCTTTGATATACATTTTCCCGAGTTCGCTGAGTTTTGGAGTGTCAACGCGGGTTGGAAACGAGTTGGGCGCGGGGAATCCACGCGGAGCGAAACTCGCGGCGGTTGTGGGCCTCTGTTTTAGTTTCGTATTGGGGGTCTCTGCTTTGGCGTTCGCGGTTTCCGTGAGGAAGGTTTGGGCCTCCATGTTCACACGGGACGCGGAGATCATTGGTTTGACGTGTGCCGTGTTGCCCATCATTGGGCTTTGCGAGCTCGGGAACTGTCCCCAGACGACGGTTTGCGGCGTCTTGAGGGGAACCGCGAGGCCCAAATTGGGAGCCCACATAAATTTAGGTTGTTTCTATCTGGTGGGTATGCCCGTCGCGGTGTGGTTGGGGTTCTTTGCGGGGTTTGACTTCAAAGGGTTGTGGCTTGGGATGTTGGCGGCGCAAGGGTCTTGTATGATCACAATGATGTTCGTGTTGGCACGTACCAATTGGGATGCTCAAGCACTAAGGGCTAAGGAGCTCACGTTTTCTGAACCTAATGAGGCGAAATTTTGCAACCTCGTGGAAGAGGAAGAGGTTGAGAAATGCTTTTTCGGATCATGTGCCACCCAACAAGCCTCTCATTTCGTTGTTTGA 1602 0.5144 MLKISPTSSFCERNEGDQNRQVQVEEEPNMFTTLIPESPTCESHNNTTHLSLAVNEAKCIFNISFSMVLTGLLLYSRSMISMLFLGHLGDLALAGGSLAIGFANITGYSILSGLAMGMEPICAQAFGAKRFKLLGLTMQRAVLLLLLTSLLISFFWLNMNKILLLCGQQQDIANEAQSYIIYSLPDLILQSLLHPLRIYLRSQSITLPLTCCAALSILLHVPINYLLVSVLNLGIKGIALSAVLTNFNLVASLVVYIILSGTHKKTWPGFSSGCFKGWRTLVNLAVPSCVSVCLEWWWYEIMILLCGVLVNPHASVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAGNPRGAKLAAVVGLCFSFVLGVSALAFAVSVRKVWASMFTRDAEIIGLTCAVLPIIGLCELGNCPQTTVCGVLRGTARPKLGAHINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGMLAAQGSCMITMMFVLARTNWDAQALRAKELTFSEPNEAKFCNLVEEEEVEKCFFGSCATQQASHFVV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01701 533 TIGRFAM matE: MATE efflux family protein 76 463 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca11g01701 533 PANTHER PROTEIN DETOXIFICATION 49 46 504 - -
Cca11g01701 533 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g01701 533 Pfam MatE 287 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca11g01701 533 Pfam MatE 68 226 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca11g01701 533 CDD MATE_eukaryotic 56 490 IPR045069 GO:0042910|GO:1990961
Cca11g01701 533 PANTHER MULTIDRUG RESISTANCE PROTEIN 46 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01701 Cca-Chr11 41397056 41399934 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01701 K03327 - gmx:100778250 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01701 11 41397056 41399934 Cca11g01701 11 41397056 41399934 ECH