Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01621 ATGGCTTCCAAAGCTGCTCTTCTTTTGTCCCTTAACATTCTCTTCTTCACTTTGGTTAGCTCCACACCTTCCACAAACCATGGTACTTGTCCCGAAGACACCCTTAAGTTTGGTGTGTGTGCTAGTCTGTTAGGTTTGGTGGACGTGAAACTTGGGGAGCCACCAAAAACCCCATGCTGCTCTCTCATTCAGGGTCTTGTTGATCATGAAGCTGCAGTGTGCCTTTGCACCGCTCTCAAAGCTAATGTGTTAGGCATCAACCTCGATGTGCCCGTCAAGTTGAACTTGTTACTCAACGTCTGTGGAAAGAAGACTCCTGAGGATTTCATCTGCGCTTAA 339 0.472 MASKAALLLSLNILFFTLVSSTPSTNHGTCPEDTLKFGVCASLLGLVDVKLGEPPKTPCCSLIQGLVDHEAAVCLCTALKANVLGINLDVPVKLNLLLNVCGKKTPEDFICA 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01621 112 SMART aai_6 30 111 IPR016140 -
Cca11g01621 112 PANTHER - 3 111 - -
Cca11g01621 112 CDD HPS_like 27 111 IPR027923 -
Cca11g01621 112 PANTHER HYPRP2 3 111 - -
Cca11g01621 112 Pfam Hydrophobic seed protein 29 112 IPR027923 -
Cca11g01621 112 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 33 111 IPR036312 -
Cca11g01621 112 Gene3D - 27 112 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01621 Cca-Chr11 39947453 39948110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01621 18 111 Acyl Lipid Metabolism Gene Families AT4G22490 36.170 1.80e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01621 - - ccaj:109809335 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01621 11 39947453 39948110 Cca11g01621 11 39947453 39948110 ECH