Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01617 ATGAGAATGGAGAAAGGGCTTGCGGAGCTGGAGCGAGTCCAAACCCAGCTCTTGCAACGCATTGAGAAACTGGAGCATTCTCTTCTTCCATCAGCAGCGCCTTCCCAAAACGACACCGTTGAGGGCACCGACACCGTGGCTCGCCTCTCCTCCATTTTGCGCCTCAACGGCGTCCACGACTTCTCCTTCAAGAGAGTCCCTTCCGATTACTACGATTGGCCCCTCGAAGCCCGTCGCCACGCCCTCTCCGCCGCCTCAATCCACCACCTCTGCAAGAGCATCGTCCTCGTTAACACGCAAGCCCCCGCTAACGTCGTCGATTGCACCGATCGGAACAATTCCAAGTATTACGTCGTTGTCGTTCAGTACACTGCTCGCTTCAACGCCGAGGCTGTCAAGAATTTTCTGTATTCGCTCAACAACGGAAGTATCGCCAAAAAGAAATTCAACATGAGGCTAGCTCCTGAGGAGACATCAATGGAGTTAACTGGATATGGGCACAATGCAGTGACTTGTATTGGCATGAAAACAGACATTCCGGTGATTTTGGATGAAGCAATTGTAAAACTAACTCCAGATTTCTTTTGGTTGGGAGGTGGTGAGGTTGATCTGAAGCTGGGGATCCGGACATCTCAATTAATCAAATTTATCAACCCATTCATTGTCAACTGTAGCAGTAACTGA 684 0.5015 MRMEKGLAELERVQTQLLQRIEKLEHSLLPSAAPSQNDTVEGTDTVARLSSILRLNGVHDFSFKRVPSDYYDWPLEARRHALSAASIHHLCKSIVLVNTQAPANVVDCTDRNNSKYYVVVVQYTARFNAEAVKNFLYSLNNGSIAKKKFNMRLAPEETSMELTGYGHNAVTCIGMKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTSQLIKFINPFIVNCSSN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01617 227 Coils Coil 7 27 - -
Cca11g01617 227 Pfam Aminoacyl-tRNA editing domain 87 216 IPR007214 GO:0002161
Cca11g01617 227 SUPERFAMILY YbaK/ProRS associated domain 59 224 IPR036754 GO:0002161
Cca11g01617 227 Gene3D - 69 225 IPR036754 GO:0002161
Cca11g01617 227 PANTHER UNCHARACTERIZED 3 226 - -
Cca11g01617 227 CDD YbaK_like 88 222 - -
Cca11g01617 227 PANTHER YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 3 226 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01617 - - gmx:100815424 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01617 11 39916421 39920005 Cca11g01617 11 39916421 39920005 ECH