Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01531 ATGGGCTGTTTCAACTCTAAGTCAGCTAGACCACGACAGTTTCCTGCACAGGAGAATACTGTAACTCTTGCATCAGAGACAGCTTTCACTGTCAGCGAGGTTGAAGCATTGTTTGAGCTTTTTAGGAGCATCAGCAGTTCTGTTATTGACGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAGAAAGGAGAACATCTTTGCAAATCGGATCTTTGATCTATTTGATGTCAAGAAGAAGGGGGTTATTGATTTTGATGACTTCGTTAGATCTCTCAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTTTTCATTTAGGGTCTATGATTTGCACAATACTGGCTTTATAGAGCGTCCAGAGGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGAAATGAAGTTGGCAGATGAGGTCATTGAAACAATTCTTGACAAGACATTCTCGGAAGCTGACCTTAACCAAGATGGAAGAATAGACATTGACGAGTGGAAAAATTTTGTTTCTAAGAATCCGTCGTTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAACATCTTTTCCAAGTTTTGTTTTTAATTCTAACGTGGACGAAATTGCTGCATAA 648 0.3812 MGCFNSKSARPRQFPAQENTVTLASETAFTVSEVEALFELFRSISSSVIDDGLISKEEFQLAIFKNKRKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNASLEDKIAFSFRVYDLHNTGFIERPEVKQMLIALLFESEMKLADEVIETILDKTFSEADLNQDGRIDIDEWKNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIAA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01531 215 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Cca11g01531 215 SUPERFAMILY EF-hand 24 204 IPR011992 -
Cca11g01531 215 Pfam EF-hand domain pair 109 179 IPR002048 GO:0005509
Cca11g01531 215 Gene3D - 20 213 - -
Cca11g01531 215 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Cca11g01531 215 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Cca11g01531 215 CDD EFh 110 180 IPR002048 GO:0005509
Cca11g01531 215 PANTHER CALCINEURIN B 1 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Cca11g01531 215 PANTHER BNAC07G34450D PROTEIN 1 214 - -
Cca11g01531 215 SMART efh_1 154 182 IPR002048 GO:0005509
Cca11g01531 215 SMART efh_1 73 101 IPR002048 GO:0005509
Cca11g01531 215 SMART efh_1 110 138 IPR002048 GO:0005509
Cca11g01531 215 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Cca11g01531 215 PRINTS Recoverin family signature 77 98 - -
Cca11g01531 215 PRINTS Recoverin family signature 124 142 - -
Cca11g01531 215 PRINTS Recoverin family signature 170 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01531 Cca-Chr11 38442646 38445839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01531 1 215 EF-hand Containing Proteins AT4G17615 77.674 5.78e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01531 K06268 - gmx:100527380 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01531 11 38442646 38445839 Cca11g01531 11 38442646 38445839 ECH
Cca06g01643 06 31663639 31667401 Cca11g01531 11 38442646 38445839 PCT