Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01530 ATGGTACTCCCTTTTACCAAATACATTCTGTTTCGTAACCGCTTGTTCAGAAAGTTTTCTCCTTTACACAGGATTTCTCAAGGGCATGTTTGCTTTGAGCAGTTCAATCCGTTTCTGCAAAAAAATTATTCTTCTGGCCGCTGTGAAAGATTATCATGGGAACGTTCCACCCAGGAAATTCTATTGGGGAAGCTTAAATTTTCTCTGAGGAATCATCAGGTGCATGAGGCATGGGAATCTTTTCAGGATTTCAGAAGCCTTTATGGCTATCCTGAGGTTCATCTAGTGAACCAGCTCATTGTTCAATTGTCCTACTCTTCTAATCAAGTTTGGATGCGGAAAGCTTGTGATTTGGTGTTGCAAATTGTTAAAGAGAAGTCAGGTTTACTTCATGCTGATACCTTAACCAAACTTGCGCTTTCTCTAGCTAGGTTGCAAATGCCATCCCCTGCCTCAGTGATACTTAGGTTGATGCTTGACAAAGGGTGCGTGCCCTCTATGCATTTATTGTCTTTGGTTGTTTTTCATATTGTGAAGACAGAAGTTGGAACACATCTTGCATCGAATTATCTGTTTCAAGTTTGTGATTTTTACAATTTTTTGCATGATAAAAAGGCTCACCATGCAGTCGCCGTTAAGCCGGATACTTTGGTCTTTAACCTTGTTCTTGATGCTTGTGTGAGGTTTAAATTGTCTTTGAAAGGCCTGTGCCTGATTGAGTTAATGTCTCTGAGCGGGACCATGGCTGATGCACACTCAATTGTGATAATTTCGCAGATTCTAGAGATGAATGGTTTGAGAGATGAACTGAAGGAATTGAAAGATCATATTGGTAGAGTTTCTGCTGCTTATGTTCGTCACTATCGTCAGTTCTATGATAGCTTGTTGAGCTTGCACTTTAAATTTAATGACATTGATGCTGCTGCAAAGCTTGTTGTGGATATGACTGGCTCGCATAATTGTAATGTGAAACCAGAATGTGGGAAACACTTGCATAATCCTTGCTTTATTGCCATTGGATCTCCTAACCTTAAGATTGCATTAAAGATACATGTTGAGCCTGAGCTACTGCATAAGGATTCTGTCCTCAAAGTAGAAAGCAGACAAGATCTTATTTTTTATAGGGGTGGGAAACTAGTTCTTAGTAACAGAGCTCTGGCTAAGTTCATTAGTGGTTACAAGAAAGATGGGAGGATCGGTGAACTTTCAAAACTTTTACTCAGTATTCAAGAGGAACTATATTCAGTGGCCGGATCCAGTTTGTGTTTTGATGTGATATGTGCTTGTATTCAGTTTGGATGGCTTGAGTGTGCTCATGACATTTTGGATGATGTTGAGGCCACTGGGTCTCCACTGGGCCAGGATACATATATGTTACTCGTGTCAGCATATCAGAGGGGGGGAATGCTAAGAGAAGCAAAGGCACTGCTGAAACAAATGAAAAAGGTTGGTTTGGACAAAGGATTATCCGATGATGCTATTGACAAACACAACCTCTCCGAAGAAACATTAAATTCACTTGGTAAAGCAGATCTGGCTATTGCCTTGGCTCAAATATTGAACGATGAAAATCAGACAGTTTTTCCTTTGGTGTATAACTTCAATTCTTGCATTTTCTTTTTCTCTAAGGCCAGAATGATAGAGGATGCACTAACGGCATATAGAAAAATGGTTGCCATGAAAGTTCAACCCACATGTCAAACTTTTGCCTTTTTGATCTGTGGATATTCTTCTCTTGGTATGTATCGCGAGATCACAATCTTGTGGGGAGACATTAAGAGATTCATGAGAAGTGGCAATTTAGAGGGAAACAGAGATCTATATGAGTTGCTGCTGCTAAACTTTCTTCGAGGTGGTTACTTTGAGAGAGTACTGGAGGTCATTAGCCATATGAAAGACCATAACATGTATACTGACAAGTGGATGTACAAAAGTGAGTTCCTTAGACTTCATAAGAATCTTTATAGAAGTTTAAAAGCATCAAATACAAGAACAGAAGCACAAAGCAAACGGCTTGAGCATGTGCAGGAATTTAGGAAATGGGTAGGTATTGATTAA 2058 0.3965 MVLPFTKYILFRNRLFRKFSPLHRISQGHVCFEQFNPFLQKNYSSGRCERLSWERSTQEILLGKLKFSLRNHQVHEAWESFQDFRSLYGYPEVHLVNQLIVQLSYSSNQVWMRKACDLVLQIVKEKSGLLHADTLTKLALSLARLQMPSPASVILRLMLDKGCVPSMHLLSLVVFHIVKTEVGTHLASNYLFQVCDFYNFLHDKKAHHAVAVKPDTLVFNLVLDACVRFKLSLKGLCLIELMSLSGTMADAHSIVIISQILEMNGLRDELKELKDHIGRVSAAYVRHYRQFYDSLLSLHFKFNDIDAAAKLVVDMTGSHNCNVKPECGKHLHNPCFIAIGSPNLKIALKIHVEPELLHKDSVLKVESRQDLIFYRGGKLVLSNRALAKFISGYKKDGRIGELSKLLLSIQEELYSVAGSSLCFDVICACIQFGWLECAHDILDDVEATGSPLGQDTYMLLVSAYQRGGMLREAKALLKQMKKVGLDKGLSDDAIDKHNLSEETLNSLGKADLAIALAQILNDENQTVFPLVYNFNSCIFFFSKARMIEDALTAYRKMVAMKVQPTCQTFAFLICGYSSLGMYREITILWGDIKRFMRSGNLEGNRDLYELLLLNFLRGGYFERVLEVISHMKDHNMYTDKWMYKSEFLRLHKNLYRSLKASNTRTEAQSKRLEHVQEFRKWVGID 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01530 685 Gene3D Tetratricopeptide repeat domain 384 684 IPR011990 GO:0005515
Cca11g01530 685 Pfam PPR repeat 456 484 IPR002885 -
Cca11g01530 685 Pfam PPR repeat 534 560 IPR002885 -
Cca11g01530 685 TIGRFAM PPR: pentatricopeptide repeat domain 534 566 IPR002885 -
Cca11g01530 685 TIGRFAM PPR: pentatricopeptide repeat domain 456 484 IPR002885 -
Cca11g01530 685 Gene3D Tetratricopeptide repeat domain 47 333 IPR011990 GO:0005515
Cca11g01530 685 Coils Coil 263 283 - -
Cca11g01530 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Cca11g01530 685 PANTHER OS07G0495300 PROTEIN 20 685 - -
Cca11g01530 685 PANTHER BNAC05G43320D PROTEIN 20 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01530 Cca-Chr11 38431551 38434508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01530 204 643 Glycosyltransferase AT1G05670 20.299 1.25e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01530 - - gmx:100812849 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01530 11 38431551 38434508 Cca11g01530 11 38431551 38434508 ECH