Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01527 ATGCATCACCACCACAATCCTCAGCTTCACTTCGGAAAAGAGAACTCCCCTCTCTCTTCTGATGCAACGTCAACTCCACTCTCCTTCTCccccaacgcaaaccaaaaccaaaatcaaacccaTTTCTCAATTCAAGTTTCACCCTCTTCGCACCATCCACCACCACCAAACATTCCCTGTCACCATGAACGCTTCTCCGATAACCCATCTCAAACCTCACCCCACAAGAGACAACCGATGAAAACCCTCCCTTTTCCTTTGTTCCCCGCACCCTTTGGCGCAAAGCTTCCAACTTCAAAGCTtcttccccgtttccgtttcctcatcttcctcccccttccctctctctacttcctcttTTCAAACCCTAGCCCGTTGGATTTCCTCTCCGTCATCGCTTTTTCAGCAGCACTGTTAATTTCCCTCAATCTGGCGCTGTCGTTCTTCACTCGATTGTTCCCCGCCAAGCTCTCTTCTCCTCCTTCTTCCTCTTCTCCTCACCCTGTGGTGTGGTCTATAGGGTCGAAGCCGAAGCAAGTGAAGAAATTGAGTTGGGGGTGTTGGGTGCAAGTTTATAGCAATGGGGACGTGTACGAGGGTGAATTCGAGAAGGGGAAGTGTTGTGGGAGTGGGGTTTATCACTATCACATGAATGGGAGATATGAGGGGGATTGGGTTGATGGGAAGTATGATGGGTATGGTGTTGAGACATGGGCTAGAGGGAGCAGGTATAGGGGGCAGTATAGGGAGGGTTTGAGGCATGGAATGGGGATCTATAGATTTTACAGTGGTGATGTGTATGGTGGTGAGTGGTCTAATGGGCAGTGCCATGGGTTTGGAGTCCACACTTGCATTGATGGCAGCCGCTATGTTGGGGAGTTCAAATGGGGTGTCAAACATGGACTCGGACAGTATCATTTCAGGATGCACATAATGCTGCCGAGAAAGCTTACAACATGGCAAAGGTGGATGAAGGGGTGA 981 0.4516 MHHHHNPQLHFGKENSPLSSDATSTPLSFSPNANQNQNQTHFSIQVSPSSHHPPPPNIPCHHERFSDNPSQTSPHKRQPMKTLPFPLFPAPFGAKLPTSKLLPRFRFLIFLPLPSLYFLFSNPSPLDFLSVIAFSAALLISLNLALSFFTRLFPAKLSSPPSSSSPHPVVWSIGSKPKQVKKLSWGCWVQVYSNGDVYEGEFEKGKCCGSGVYHYHMNGRYEGDWVDGKYDGYGVETWARGSRYRGQYREGLRHGMGIYRFYSGDVYGGEWSNGQCHGFGVHTCIDGSRYVGEFKWGVKHGLGQYHFRMHIMLPRKLTTWQRWMKG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01527 326 MobiDBLite consensus disorder prediction 1 80 - -
Cca11g01527 326 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 220 306 - -
Cca11g01527 326 Pfam MORN repeat 244 266 IPR003409 -
Cca11g01527 326 Pfam MORN repeat 198 218 IPR003409 -
Cca11g01527 326 Pfam MORN repeat 269 289 IPR003409 -
Cca11g01527 326 Pfam MORN repeat 290 308 IPR003409 -
Cca11g01527 326 Pfam MORN repeat 221 243 IPR003409 -
Cca11g01527 326 Gene3D - 274 313 - -
Cca11g01527 326 Gene3D - 180 227 - -
Cca11g01527 326 Gene3D - 228 273 - -
Cca11g01527 326 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 31 308 - -
Cca11g01527 326 PANTHER MORN REPEAT PROTEIN 31 308 - -
Cca11g01527 326 SMART morn 265 286 IPR003409 -
Cca11g01527 326 SMART morn 196 217 IPR003409 -
Cca11g01527 326 SMART morn 219 240 IPR003409 -
Cca11g01527 326 SMART morn 242 263 IPR003409 -
Cca11g01527 326 SMART morn 288 309 IPR003409 -
Cca11g01527 326 MobiDBLite consensus disorder prediction 12 48 - -
Cca11g01527 326 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01527 Cca-Chr11 38394706 38399024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01527 190 305 Acyl Lipid Metabolism Gene Families AT2G26420 36.207 1.13e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01527 - - pvu:PHAVU_003G226200g 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01527 11 38394706 38399024 Cca11g01527 11 38394706 38399024 ECH