Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01523 ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCCGAGATCGACGGACACGTCGCCGACAATTTCCGCGCCCTATCAAATGGATTTCAGAAGTTGGAGAAGATTAAGGATTCCAATAGACAGAGCCGGCAGTTGGAAGACCTCACGGAAAAAATGCGAGATTGTAAACGGCTTATTAAGGATTTCGATAAAGAGATCAAAACTTTGGAGGGTAGCTTTGACAGAGAAACCAACAAAATGTTGAATGAGAAAAAACAGTCAATGATCAAAGAGTTAAACTCATATGTTGCTTTGAAAAAGCAGTTTGCTTCAAATATTGAAAACAAAAAAATTGAACTCTTTGAGGGGCCCAGTGAAGGTTTTGCAGAAGAAAATAGCTTGCTAGCATCCTCAATGACAAACGAACAGCTAATGGATCGTGGGAATCATATGATGGATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGGTAGTTCAAGAGACAATAAATGTTGGTACAGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTGGATTCAATTCATTTCTCTATGAAGAGAGCCTCTCAATTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGGTGCTACTTGTTCTTGTTGTCATTGGAGTAATTGCTATCATTATTGTAAAGCTTGTGCACCCGAACAATCAGGACATTCGCGACATTCCAGGATTAGCCCCTCCAGTTCAGAACCGAAGACTGCTTTGGAGTCACAGTTGA 786 0.4237 MDQLSAISEDLAEIDGHVADNFRALSNGFQKLEKIKDSNRQSRQLEDLTEKMRDCKRLIKDFDKEIKTLEGSFDRETNKMLNEKKQSMIKELNSYVALKKQFASNIENKKIELFEGPSEGFAEENSLLASSMTNEQLMDRGNHMMDETDQAIERGKKVVQETINVGTETAAALKAQTEQMSRVVNELDSIHFSMKRASQLVKEIGRQVATDKCIMVLLVLVVIGVIAIIIVKLVHPNNQDIRDIPGLAPPVQNRRLLWSHS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01523 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Cca11g01523 261 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Cca11g01523 261 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 250 - -
Cca11g01523 261 SMART tSNARE_6 137 204 IPR000727 -
Cca11g01523 261 Coils Coil 38 65 - -
Cca11g01523 261 Gene3D - 133 212 - -
Cca11g01523 261 PANTHER NOVEL PLANT SNARE 11 1 250 - -
Cca11g01523 261 SUPERFAMILY SNARE fusion complex 132 205 - -
Cca11g01523 261 Pfam Sec20 151 226 IPR005606 GO:0005484|GO:0006890
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01523 Cca-Chr11 38357722 38362557 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01523 K08494 - gmx:100786429 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01523 11 38357722 38362557 Cca11g01523 11 38357722 38362557 ECH