Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01520 ATGGCTCTAACACTTCGTTCTTCAATTTCTTTTATTATTCAGAAAGAAACCAAAGTCCTTAAAACTTCTGATGATGTCCCTGCGACAGTTAGTTTTGCAAAATTTAGGCCATCGTTCCGTCTTGTGGCTAAAAATTCCATGCAAGAAGCTCATCACACGCACGAGAACCGCTTCAACTCTGAAGCAAGGAGAAACGATAAATGGGAGAAGGTGCATGCCCCATCTGTTGCGCATAACCACGATCATTCGAAGAGAGTACCTGTGTTTGTGATGCTGCCACTAGACACCGTAACTATGGGAGGAAGCTTGAATAAGCCAAGAGCAATGAACGCAAGTTTGATGGCCTTGAAGAGTGCAGGAGTTGAAGGGGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGGCCTTTGAAATACAACTGGGAAGCCTATGCAGAGCTTGTGCAGATGGTACAAATGCATGGTTTGAAGCTTCAAGTTGTGATGTCTTTCCATCAGTGTGGGGGGAATGTTGGGGACAATTGCAGCATTCCTCTACCACCGTGGGTGCTGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCGGAATACATCTCGTTGGGCTGTGATTCAATTCCTGTTCTAAGAGGAAGGACTCCCCTCCAAGTGTACGCTGACTACATGAGAAGCTTTCATGACAGATTCAAAGACTACTTGGGCAGTGTTATCGTGGAAATACAAGTGGGGATGGGTCCTTGTGGAGAGCTAAGATATCCATCTTATCCAGAAACCAATGGAACCTGGAGGTTTCCCGGAATCGGAGAATTCCAATGTTATGACAAGTACATGAAAGCGTCATTGGCAGCAGCAGGCGCAGCCATTGGAAAGAAAGAATGGGGAGGAAGTGGACCACATGACTCAGGCCAGTACAATCAGTTTCCTGAGGATACAGGATTTTTCAGAAGGGAAGGGACATGGAACTCTGAATATGGACGGTTCTTTCTGGAATGGTACTCGGGTAAATTGCTGGAACACGGTGAGAGGATCCTCGTATCTGCCAAAGGAATATTCCAAACATCTGGGGTGAAACTATCAGGGAAGGTTGCTGGAATCCATTGGCATTACAGAGCAAGGTCTCATGCAGCTGAACTAACTGCTGGCTACTATAACACACGACATAATGATGGATATTTGCCTATAGCCAGAATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACTTGCATGGAAATGAAAGACAGAGAGCAACCTGACTTTGCTAACTGCTCACCTGAGGGGTTAGTTCACCAGGTAAAGATGGCAACAGCAACAGCTAGAGTGGAACTTGCTGGAGAAAATGCATTGGAGAGATATGATGCAAATGCATATGCTCAAGTTTTATCAACAAGTAAGTCGGACTCGGGAAGTGGATTGGCCGCATTCACATATCTTAGAATGAACAAGAGGTTGTTTGAAGGTGATAACTGGCGGCACCTAGTAGATTTCGTAAGAAGCATGTCTGAAGGTGGTCGGAGAGTTAGACTTCCAGCGTCTGATTCCCATGGGAGTGATCTCTATGTTGGGCACATCAAAGGAACCCGGGAGAAGCACACACAAGAGGCTGCTCTTGTGTAA 1647 0.459 MALTLRSSISFIIQKETKVLKTSDDVPATVSFAKFRPSFRLVAKNSMQEAHHTHENRFNSEARRNDKWEKVHAPSVAHNHDHSKRVPVFVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEAYAELVQMVQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSIPVLRGRTPLQVYADYMRSFHDRFKDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAGAAIGKKEWGGSGPHDSGQYNQFPEDTGFFRREGTWNSEYGRFFLEWYSGKLLEHGERILVSAKGIFQTSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRHNDGYLPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVHQVKMATATARVELAGENALERYDANAYAQVLSTSKSDSGSGLAAFTYLRMNKRLFEGDNWRHLVDFVRSMSEGGRRVRLPASDSHGSDLYVGHIKGTREKHTQEAALV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01520 548 PANTHER BETA-AMYLASE 1 548 - -
Cca11g01520 548 SUPERFAMILY (Trans)glycosidases 83 513 IPR017853 -
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 163 184 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 277 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 438 460 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 PANTHER - 1 548 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 ProSitePatterns Beta-amylase active site 1. 167 175 IPR018238 GO:0000272|GO:0016161
Cca11g01520 548 Pfam Glycosyl hydrolase family 14 89 506 IPR001554 GO:0000272|GO:0016161
Cca11g01520 548 Gene3D Glycosidases 78 541 - -
Cca11g01520 548 PRINTS Plant beta-amylase signature 245 254 IPR001371 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Plant beta-amylase signature 404 414 IPR001371 GO:0000272|GO:0016161
Cca11g01520 548 PRINTS Plant beta-amylase signature 486 500 IPR001371 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01520 Cca-Chr11 38327891 38330785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01520 1 548 Glycoside Hydrolase AT4G17090 72.131 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01520 K01177 - gmx:100818063 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01520 11 38327891 38330785 Cca11g01520 11 38327891 38330785 ECH