Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01519 ATGGAGGGTATCATCAAGGGCTTAATCGACGTCGCTATCGGCCCCGATCACGCCGATCGGGAAGAGGAACGCGGTGATCGCTCCTGGGCTGACCTTGTCTCCGGCGATCCCCATCAGGATCAACCGCCTTCTCATCAGCATCAGCAACAATGGTCCAACCCACCTCGCAAGGAGGAAACATGGCAAGAGGATGGTCACAGTTACAGGGCTTCCAACAGGCCTCATCATGAACAATATCGTCCTGAACACGATGAGTGCCAATCCGAAAATTTCAATAGTTCTAACAAGCTGGATGAAGATCAAGATGGATGGCAGACTGTTGGCAAATCTTCAAGGCATAAACACAAGGTTCCAAAAGAAAACTGGAACAGCTATAAACGACCTCCTGATGAGCAAGAATACTCTAATGAGGTAGAATTTCGTGCTGGTGTGGAACCCTCGGAAGATGAACTTGCTGATCTTTCAAGAGCTTGTGAAAAACTGTGGCATCTTGATTCAAATCGTTTGACACCTAACAAAGACTACGAAATTGACTGTGGTGAAGGCAAAAAGGCTTACCAAAAGGAAGATATGGCACAGGGGAGCTTGTTTACTTGGGTTAATGATGATGTATTCAGAAAGCCTACTTTTGCTCGTTTTCTTTCTCTTTTAGATAATTACAATCCACATCAAGGATGTAAGGAAGTAGTCACATCTGAAGAGAGACAAGAACAAGCTTCTTTCATAGAAGAAATCAGTAGAACAGCCCCAATTAAATATCTTCACAGGTATCTTGCTTCCAAAGGAATTGTATCAGAGAGTTACCAAGAATTCAAAAGAATGATGACCAATCTGTGGTTTGACCTTTATGGCCGTGGTGGCACTTCTGGTTCCTCTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAAGCTGGAGAAGTTTCTGGCTTTCATAACTGGCTGCAGTTTTACCTTGAAGAAGAAAAGGGGAGAATTGATTATCAAGGCTATATTTTACCCCGTCGACGGGGAGAATTTCCTGACTCTGAAACCCAGCTTCTGACTATTCAGTTTGAATGGAATGGTGTTCTGAAATCTGTTTCAAGCACTTTGGTTGGAGTGAGTCCTGAATTTGAAATTGCGTTGTACACCCTGTGTTTCTATGTTGGCGGGGAGGATAACCACATTCAGCTTGGCCCTTATGAAGTTAACATCAAGTGCTATCGTTTAGGCAATCGAATTGGATCTGTTTTCCCCATTGCAGATTCTTGA 1257 0.4344 MEGIIKGLIDVAIGPDHADREEERGDRSWADLVSGDPHQDQPPSHQHQQQWSNPPRKEETWQEDGHSYRASNRPHHEQYRPEHDECQSENFNSSNKLDEDQDGWQTVGKSSRHKHKVPKENWNSYKRPPDEQEYSNEVEFRAGVEPSEDELADLSRACEKLWHLDSNRLTPNKDYEIDCGEGKKAYQKEDMAQGSLFTWVNDDVFRKPTFARFLSLLDNYNPHQGCKEVVTSEERQEQASFIEEISRTAPIKYLHRYLASKGIVSESYQEFKRMMTNLWFDLYGRGGTSGSSSAFEHVFVGEIKQAGEVSGFHNWLQFYLEEEKGRIDYQGYILPRRRGEFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFEIALYTLCFYVGGEDNHIQLGPYEVNIKCYRLGNRIGSVFPIADS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01519 418 SUPERFAMILY EndoU-like 152 416 IPR037227 -
Cca11g01519 418 MobiDBLite consensus disorder prediction 117 135 - -
Cca11g01519 418 CDD XendoU 150 414 IPR018998 GO:0004521
Cca11g01519 418 PANTHER - 59 417 - -
Cca11g01519 418 MobiDBLite consensus disorder prediction 13 33 - -
Cca11g01519 418 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 150 418 IPR018998 GO:0004521
Cca11g01519 418 MobiDBLite consensus disorder prediction 57 89 - -
Cca11g01519 418 Pfam Endoribonuclease XendoU 153 414 IPR018998 GO:0004521
Cca11g01519 418 MobiDBLite consensus disorder prediction 1 135 - -
Cca11g01519 418 PANTHER PLACENTAL PROTEIN 11-RELATED 59 417 IPR039787 GO:0004521
Cca11g01519 418 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01519 Cca-Chr11 38316310 38320700 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01519 K14648 - gmx:100813919 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01519 11 38316310 38320700 Cca11g01519 11 38316310 38320700 ECH