Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01516 ATGCACTTCTCCGCCTCCGCCTCCGCCTCCACTAGACCTTGTTACTTGGAACAAGACCACGGTTTGGCTTCCTTAAACAACAACATGGACGCTTGTCATCACCGTGCCAACAATTTCTTCTCCAGGTCCATCACCATGGGTTACGCCACCTCCTTCACTCAGAGGAGCCTCTCCGTTTCCTCCCCGAGATCCGCCACATTCCAGGATCACCCGCCGCACTTCCTCGCCGCCTGCTTCCTCTGCAAAAAACCTCTCGGGGACAATCGGGACATCTTCATGTATAGAGGGGACACGCCTTTCTGTAGCGAAGAGTGCAGGCAAGAGCAGATAGAGATAGACGAAGCGAAAGAGAAGAAGAGGAACCTTTCTTCGTCGATGAAGGCTTTGAGGAAGAAGGAGCAGAGAAAATCGAGTTCGCCAAACAAGTCCCAAGATTACTCGTTTCGTACAGGGGCAGTTGCTGCAGCTTAG 471 0.5265 MHFSASASASTRPCYLEQDHGLASLNNNMDACHHRANNFFSRSITMGYATSFTQRSLSVSSPRSATFQDHPPHFLAACFLCKKPLGDNRDIFMYRGDTPFCSEECRQEQIEIDEAKEKKRNLSSSMKALRKKEQRKSSSPNKSQDYSFRTGAVAAA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01516 156 Pfam zinc-finger of the FCS-type, C2-C2 67 116 IPR007650 -
Cca11g01516 156 PANTHER FCS-LIKE ZINC FINGER 1-RELATED 32 156 IPR044533 -
Cca11g01516 156 ProSiteProfiles Zinc finger FLZ-type profile. 73 117 IPR007650 -
Cca11g01516 156 PANTHER FCS-LIKE ZINC FINGER 2 32 156 - -
Cca11g01516 156 Coils Coil 105 135 - -
Cca11g01516 156 MobiDBLite consensus disorder prediction 116 139 - -
Cca11g01516 156 MobiDBLite consensus disorder prediction 116 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01516 Cca-Chr11 38204576 38205925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01516 - - aprc:113849917 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01516 11 38204576 38205925 Cca11g01516 11 38204576 38205925 ECH