LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g01509	ATGGACACCTTGATCGCACTCGTCAACCGCATTCAGCGCGCCTGTACGCTTCTCGGCGACCACGGCGCCGACGCCGCCTTGCCTACTCTATGGGAAGCGCTTCCCTCCGTCGCCGTCGTCGGCGGCCAGAGTTCTGGAAAGTCGTCGGTGCTTGAGAGCATTGTCGGCCGCGATTTTCTTCCCAGGGGATCAGGGATTGTGACTCGGAGGCCTTTGGTGCTGCAACTGCACAAAACAGAGCAAGGAATGCAAGACTATGCGGAGTTTCTGCACTTGCCTAAGAAACGCTTTACTGATTTCTCTATGGTTCGAAAGGAAATTGAAGATGAAACTGATAGACTGACTGGGAAATCAAAACAGATATCTCCTGTTCCTATTCATCTCAGCATCTATTCCCCAAATGTTGTCAATCTAACACTGATCGATCTGCCTGGTTTGACAAAGGTTGCTGTAGAGGGACAGCCAGAAAGTATTGTTCAAGACATTGAAAGCATGATTCACTCATATGTTGACAAGCCTAATTGCTTAATTTTGGCCATTACTCCAGCAAATCAAGATGTAGCAACATCAGATGCCATCAAGGTTTCTAGACAAGTTGACCCTGCAGGGGAAAGAACATTTGGTGTGTTGACAAAGCTTGATTTGATGGACAAAGGAACAAATGCTCGGGATGTCCTCGAGGGAAGATCGTATAGACTTCAAAACCCTTGGGTGGGAATTGTAAACCGTTCTCAGGCAGATATTAATAGGAATGTGGATATGATTGCTGCTCGGAAGCGGGAGCGTGAATTTTTCGCCACCAATCCTGATTACTCACACTTAGCCAGCCAAATGGGCTCCGAATATCTAGCAAGGCTTCTGTCAAAGCATTTGGAGTCTGTGATAAGAGCTCGGATTCCAGGTATTGCGTCTTTAATTAATAGAAGCATCAATGATCTTGAAGCAGAGTTGGCACGCCTTGGTCGACCAATTGCTGTTGACGCTGGGGCCCAGCTGTACACTATTCTAGAATTATGCCGCGCATTTGAACGAGTTTTTAAGGAGCATTTAGATGGAGGGCGACCAGGTGGAGATAGAATTTATGTGGTTTTCGATTACCAGCTTCCTGCTGCATTGAGAAAGCTTCCACTGGACCGTCATTTGTCGTTGCAAAGTGTAAGAAAAGTGATTTCAGAGGCAGACGGGTACCAACCTCATCTAATCGCCCCAGAGCAAGGTTACCGACGCCTACTGGAGAGTTCAATGAATTTTTTCAAAGGTCCCGCGCAAGCTTCTGTGGATTCTGTAAGTGCTTTTGCTATAAATAGTTCGATCCAGTTCAACTCTTCAATTGGAAATCAATTTTTCCAAAAAAAATCTCCATAA	1365	0.4615	MDTLIALVNRIQRACTLLGDHGADAALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEQGMQDYAEFLHLPKKRFTDFSMVRKEIEDETDRLTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQDIESMIHSYVDKPNCLILAITPANQDVATSDAIKVSRQVDPAGERTFGVLTKLDLMDKGTNARDVLEGRSYRLQNPWVGIVNRSQADINRNVDMIAARKREREFFATNPDYSHLASQMGSEYLARLLSKHLESVIRARIPGIASLINRSINDLEAELARLGRPIAVDAGAQLYTILELCRAFERVFKEHLDGGRPGGDRIYVVFDYQLPAALRKLPLDRHLSLQSVRKVISEADGYQPHLIAPEQGYRRLLESSMNFFKGPAQASVDSVSAFAINSSIQFNSSIGNQFFQKKSP	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g01509	454	PRINTS	Dynamin signature	34	52	IPR022812	-
	Cca11g01509	454	PRINTS	Dynamin signature	59	76	IPR022812	-
	Cca11g01509	454	PRINTS	Dynamin signature	132	149	IPR022812	-
	Cca11g01509	454	PRINTS	Dynamin signature	182	200	IPR022812	-
	Cca11g01509	454	PRINTS	Dynamin signature	201	217	IPR022812	-
	Cca11g01509	454	PRINTS	Dynamin signature	224	243	IPR022812	-
	Cca11g01509	454	PANTHER	DYNAMIN	2	430	IPR022812	-
	Cca11g01509	454	CDD	DLP_1	34	300	IPR001401	GO:0003924\|GO:0005525
	Cca11g01509	454	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	29	307	IPR027417	-
	Cca11g01509	454	Pfam	Dynamin family	37	212	IPR045063	-
	Cca11g01509	454	PANTHER	-	2	430	-	-
	Cca11g01509	454	Pfam	Dynamin central region	221	432	IPR000375	-
	Cca11g01509	454	ProSiteProfiles	Dynamin-type guanine nucleotide-binding (G) domain profile.	31	300	IPR030381	GO:0005525
	Cca11g01509	454	SMART	dynamin_3	1	251	IPR001401	GO:0003924\|GO:0005525
	Cca11g01509	454	ProSitePatterns	Dynamin-type guanine nucleotide-binding (G) domain signature.	60	69	IPR019762	-
	Cca11g01509	454	Gene3D	-	1	309	IPR027417	-
	Cca11g01509	454	Gene3D	Dynamin, middle domain	326	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g01509	Cca-Chr11	38101944	38106538	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g01509	-		-	pvu:PHAVU_003G228100g	771.926

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g01509	11	38101944	38106538	Cca11g01509	11	38101944	38106538	ECH