Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01005 ATGGAGCAATTGAAGACGATCGGGCGCGAGCTCGCGATGGGATCCCAAGGCGGGTTCGGGCAATCGAAGGAGTTTCTGGAGCTGGTGAAATCCATCGGCGAGGCGCGATCGAAGGCGGAGGAGGACCGCATCGTGGTGCGCGAGATAGAGACCCTCAAACGACGCATCGTCGAGCCCGACATCCCGAAACGCAAGATGAAGGAGTACATCATCCGCCTCCTCTACGTGGAGATGCTCGGCCACGACGCGTCGTTCGGCTACATCCACGCCAAGGACCTCAAGTCCGACAACTACCTCGTCGTTTGCGCCGCGCTCAACGCCGTTTGCAGGCTCATCAACGAGGAGACCATCCCCGCCGTTCTGCCTTCCGTCGTTGACCTTCTCGCCCACCCCAAGGACGCCGTTAGGAAGAAGGCCGTCATGGCGCTCCACCGCTTCCACCTCAAGTCCTCTTCCTCCGTTTCGCATTTGGTTTCGAACTTCCGCAAGAAGTTGTGCGATAACGACCCCGGCGTCATGGGCGCCACTTTGTGCCCTTTGTTCGACCTCATCGCGCTTGATCCCAGCTCTTATAAGGACCTTGTCGTTAGCTTCGTCAGCATTCTTAAACAAGTCGCCGAACACCGCTTGCCTAAGAGCTATGACTATCACCAGATGCCCGCGCCGTTCATTCAGATTAAGTTGCTGAAAATACTCGCCGTGTTGGGGAGTGGGGACAAGCAGGCTAGTGAGCACATGTATACTGTAATTGGTGAAATAATTAGGAAGGGCGATTCGTCAAGTAATATAGGGAATGCTATTCTTTATGAGTGCATATGCTGTGTCTCTTCCATATATCCCAATCATAAGTTGTTAGAAGCGGCTGCAGATGTCAATGCGAAATTTTTGAAGAGTGACAGTCATAATCTCAAGTACATGGGAATTGATGCACTTGGTCGGCTGATAAAGATAACTCCACATGTTGCAGAACAGCATCAACTGGCTGTTATTGACTGCTTAGAGGACCCTGATGATACTCTGAAGCGAAAAACTTTTGAACTACTCTACAAAATGACCAAGTCCTCTAATGTGGAAGTTATTGTTGACAGAATGATTGATTACATGATTAGCATAAGCGATGATCATTATAAAACCTATATAGCATCTCGATGTGTTGAACTTGCAGAGCAATTTGCTCCTAGTAATCATTGGTTTATACAGACTATGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTGAATATTAAGGTGGCACATAATTTAATGCGATTGATTGGTGAAGGATTTGGAGAGGATGCTGCTACTGCAGATAATCAGTTGAGATCATCCGCTGTTGAGTCATATTTGCGCATTATTGGGGAGCCAAAGCTTCCGTCAATGTTTCTTCAAGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGTTATGTGACATTGCAGAGGCCTATTCAAATGATGAAACTGTGAAGGCATATGCGATTTCAGCATTAACAAAAATGTATGCATTTGAAATAGCAGCTGGGAGGAAAGTTGATATGCTGCCTGAGTGTCAATCCTTTGTTGAAGAATTATTAGCATCCCACTCCACTGATTTGCAGCAACGTGCATATGAGTTGCAAGCTCTTATTGGTTTGGATGCACGAGCTGTTGAAACAATAATGCCCCAAGATGCAAGTTGTGAAGACATTGAGGTTGATACGGATCTTGCTTTCCTCAATGGTTATGTACAGCAGTCTCTAGAAAGGGGTGCTCTGCCTTACATTCCAGAGGATGAGCGCACTGGAATGGTGAATGTGAGCAACTTCAGAAGCCAGGATCAACATGAATCTGCTCAACATGGTCTGAGATTTGAGGCATATGAAGTTCCAAAGCCTCCAATGCCATCAAAAGTAGCTACAGTTTCACTTTCATCATCAACGGACCTTGTTCCAGTGCCTGAGACATTGTATTCTAGGGAGACTCACCAGATCTCGTCAGCGGGATTATCATCAGAGACAGGATCCTCAGAGCTTAAGCTCAAGCTTGACGGTGTTCAGAAGAAATGGGGCAGGCCAACTTATTCATCCCCTACATCATCCTCAAATTCTACTTCCCAAAACCCAGTGAATGGGGCAACACAGACGACGGATGTTGCAACTGCTGTAAATTCAAAAGTACGTGATAACTATGACACAAGGAAGCAACGGATTGAAATTTCTCCTGAAAAGCAAAAGCTTGCTGCTTCATTGTTTGGTGGTTCAACTAAAACTGAGAAAAGATCGTCAACTAGCAGTAAGGTTCCAAAGGCCAGTGCTAGTGTTCCAGACAGATCTCAGGAATCAAAAGCTGCAGTGGCACCCAGTGAAGTTGCTCAGGGGAAAACTATTCAATCATCTCCTCCTCCAGATTTGCTTGACTTGGATGAATCAACTATCACTGTCGCACCTCCCTCCGTGGACCCATTCAAGCAATTGGAAGGGCTTCTTGACCCAAGCATTAATTCTACAACAAATCATAGTAGTGGTGTTACAAATGCACCAGATATTATGACACACTATGCAGCGACTCCTGCAAGTAGAGAAAGTGGCAGTGGTGGCTATTCTATCCCTGTAACTGGGGATAATGTAAATCTTTTATCAGAGTTGTCAAATGCAGCTGTCAGAGGTACTACTGGAGAAACAACTACGACGCCTTTGCCACAATCTGTAAAGGGTCCGAATGCTAAAGATTCTTTGCAAAGGGATGCAAAAGTCAGGCAGATGGGTGTGACACCCACAAGTCAGAACCCCAACTTGTTCAGTGACTTGCTTGGCTAA 2832 0.4626 MEQLKTIGRELAMGSQGGFGQSKEFLELVKSIGEARSKAEEDRIVVREIETLKRRIVEPDIPKRKMKEYIIRLLYVEMLGHDASFGYIHAKDLKSDNYLVVCAALNAVCRLINEETIPAVLPSVVDLLAHPKDAVRKKAVMALHRFHLKSSSSVSHLVSNFRKKLCDNDPGVMGATLCPLFDLIALDPSSYKDLVVSFVSILKQVAEHRLPKSYDYHQMPAPFIQIKLLKILAVLGSGDKQASEHMYTVIGEIIRKGDSSSNIGNAILYECICCVSSIYPNHKLLEAAADVNAKFLKSDSHNLKYMGIDALGRLIKITPHVAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIGEGFGEDAATADNQLRSSAVESYLRIIGEPKLPSMFLQVICWVLGEYGTADGKYSASYITGKLCDIAEAYSNDETVKAYAISALTKMYAFEIAAGRKVDMLPECQSFVEELLASHSTDLQQRAYELQALIGLDARAVETIMPQDASCEDIEVDTDLAFLNGYVQQSLERGALPYIPEDERTGMVNVSNFRSQDQHESAQHGLRFEAYEVPKPPMPSKVATVSLSSSTDLVPVPETLYSRETHQISSAGLSSETGSSELKLKLDGVQKKWGRPTYSSPTSSSNSTSQNPVNGATQTTDVATAVNSKVRDNYDTRKQRIEISPEKQKLAASLFGGSTKTEKRSSTSSKVPKASASVPDRSQESKAAVAPSEVAQGKTIQSSPPPDLLDLDESTITVAPPSVDPFKQLEGLLDPSINSTTNHSSGVTNAPDIMTHYAATPASRESGSGGYSIPVTGDNVNLLSELSNAAVRGTTGETTTTPLPQSVKGPNAKDSLQRDAKVRQMGVTPTSQNPNLFSDLLG 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01005 943 MobiDBLite consensus disorder prediction 895 920 - -
Cca11g01005 943 Pfam Adaptin N terminal region 91 556 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cca11g01005 943 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 91 939 - -
Cca11g01005 943 MobiDBLite consensus disorder prediction 895 913 - -
Cca11g01005 943 MobiDBLite consensus disorder prediction 732 746 - -
Cca11g01005 943 MobiDBLite consensus disorder prediction 693 813 - -
Cca11g01005 943 MobiDBLite consensus disorder prediction 755 783 - -
Cca11g01005 943 MobiDBLite consensus disorder prediction 696 731 - -
Cca11g01005 943 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 13 90 - -
Cca11g01005 943 PIRSF AP4_epsilon 883 943 IPR017109 GO:0015031|GO:0030124
Cca11g01005 943 PIRSF AP4_epsilon 605 804 IPR017109 GO:0015031|GO:0030124
Cca11g01005 943 PIRSF AP4_epsilon 90 635 IPR017109 GO:0015031|GO:0030124
Cca11g01005 943 PIRSF AP4_epsilon 11 91 IPR017109 GO:0015031|GO:0030124
Cca11g01005 943 SUPERFAMILY ARM repeat 22 558 IPR016024 -
Cca11g01005 943 Gene3D - 12 568 IPR011989 -
Cca11g01005 943 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 91 939 - -
Cca11g01005 943 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 13 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01005 Cca-Chr11 22906113 22921276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01005 K12400 - gmx:100806914 1597.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01005 11 22906113 22921276 Cca11g01005 11 22906113 22921276 ECH