Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00982 ATGGGGTTTTTGGAGCTGTTTTCTGTTGCGTCTTTTCCGGTGATTAAAGTATTATTGGTTACTGCACTTGGCTTGTTTCTTGCACTGGATAACGTATCAGTATTGGGAGAAGATGCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCATCACTGGTGGGTAGCAATCTGGCCAAAACGATTACTTTTGAGAGTGTTGTTCGGTTGTGGTTCATGCCGGTGAATATTCTTGCCACATTCATATTAGGATCAGCATTGGGATGGATTTTGATTAAAATGACAAGGCCTCCCAAACAAATGGAAGGTCTAATCTTGGGTTGTTGTTCTGCTGGAAATTTAGGGAACTTGCCTATGATCATTATTCCGGCTATATGTAAAGAGAAAGGAAGTCCTTTTGGAGAACCTGATCTTTGCCATCAATATGGAATGGCTTATGCTTCACTTTCTATGGCGATTGGAGCAGTTTTTCTATGGTCATATGTTTACAACATAATGAGGATTTCCTCAAGTAGAATCCAGAAAGAAGAAAGTACAAGCATTGACAACAGCATATTGAAGGCTTCAAGGGAGAAATCAGAGTCACACCAAGACAAATTTTCAGAAACACTTCAGCCTGCAAAAGACACCATGGATGATGCATATACCATACTACTTCCTGGTCCAGAATCAGAGGAAAAAGTTTCATTTTCAACTAAAATTAAGCACCACTTGAGGATGATTTCAAGCAACACAAATTTCAAAGCCATGTTTGCCCCATCAACCCTCGGAGCGATTCTTGGCTTTATCATTGGTGTAATCCCCCAAATACGTAATTTCATTATAGGCAATAATGCTCCACTTCGTGTTGCGGAAGATTCTGTTTCCATGCTGGGTGAGGCAGCCATCCCTACAGTCACTCTTATAATGGGTGCAAACCTACTTAAAGGTTTGAAAGGAACCAGAACTCCAGTGTGGACAGTTGTGGGAATTGTAGTGGTCAGATATGTTTTTCTGCCTATTTTGGGTGTTGCAGTTGTGAAAGGGGCCATGCACTTAAGTTTGGTGCATTCAGATGCCTTGTATCAGTTCATACTTCTTCTTCAATATGCACTTCCTCCAGCCATGAATATAGGAACCATAGCACAATTGTTCGGATCTGGTGAAAGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTAGCATCAATTGCAGTTACCCTTTGGTCAACTTTCTTCATGTGGCTAGTGTCTTGA 1245 0.4056 MGFLELFSVASFPVIKVLLVTALGLFLALDNVSVLGEDARKKVNQLVFYVFNPSLVGSNLAKTITFESVVRLWFMPVNILATFILGSALGWILIKMTRPPKQMEGLILGCCSAGNLGNLPMIIIPAICKEKGSPFGEPDLCHQYGMAYASLSMAIGAVFLWSYVYNIMRISSSRIQKEESTSIDNSILKASREKSESHQDKFSETLQPAKDTMDDAYTILLPGPESEEKVSFSTKIKHHLRMISSNTNFKAMFAPSTLGAILGFIIGVIPQIRNFIIGNNAPLRVAEDSVSMLGEAAIPTVTLIMGANLLKGLKGTRTPVWTVVGIVVVRYVFLPILGVAVVKGAMHLSLVHSDALYQFILLLQYALPPAMNIGTIAQLFGSGESECSVIMLWTYALASIAVTLWSTFFMWLVS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00982 414 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 413 - -
Cca11g00982 414 Pfam Membrane transport protein 12 405 IPR004776 GO:0016021|GO:0055085
Cca11g00982 414 PANTHER - 1 413 IPR045033 GO:0080162
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00982 Cca-Chr11 21334132 21346111 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00982 K24139 - gmx:100810166 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00982 11 21334132 21346111 Cca11g00982 11 21334132 21346111 ECH