Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00981 ATGGGGTTTATAGAGCTGCTTTCTGTTGCGTCTTTTCCGGTCATCAAAGTATTATTGATTACTGCAATTGGCTTGTTTCTTGCACTGGATAACGTATCAATATTGGAAGAAGATGCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCGTCACTGGTGGGTAGCAATCTGGCCAAAACGATTACTTTTGACAGTGTTGTTAAGTTGTGGTTCATGCCGGTGAATATTCTTGCCACATTCATATTAGGATCAGCATTGGGATGGATTTTGATTAAAATGACAAGGCCTCCCAAACAAATGGAAGGTCTAATCTTGGGTTGTTGTTCTGCTGGAAATTTAGGGAACTTGCTTATAATCATTATTCCGGCAATATGTGAAGAGAGTGGAAGTCCTTTTGGTGACTCTGATGTATGCTATAAATATGGAATGGCTTATGCTTCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATAATGAGGATTTCCTCAAGTAGAACTGAACCAGAAGACAATACTAGCGATGCCAGCAGCTTATTGAAGGCTTCAGAGGAAATATCAGATTCAGAGTCACACCAAGCCAATTTTTCAGAAACACTTGATCCTACAGAAGACGTCATGGATGATGTTTATACCTTATTGCTTCCTGACGCAGAATCAAATGAAAAAGCTTCAATTTCAAGTAAAATTAAGCAATGCTTGAGGAAGATTTCAAGCAACTTAAATTTAAAAGCCATCTTTGCGCCTTCAACACTTGGAGCTATTGTTGGATTTATCATTGGTATAATATCCCCATTACGTAATTTCATTATAGGTAGTAGCGCTCCTCTTCATGTGGTTGAAGAATCTGCTTACATGTTGGGTGAGGCAGCCATCCCTACTCTCACTCTCATAATGGGTGCAAATCTACTTAAAGGTTTGAAAGGAACAAGTCCTCCAGTGTGGACCATTGTGGGAATTATAGCGGTGAGATACATTTTCTTGCCTCTTCTGGGTGTTGCTGTTGTGAAAGGGGCGATACATTTGAGTTTAGTGCGTTCAGACGCCTTGTATCAGTTTGTGCTTCTACTTCAATATGCACTTCCACCAGCTATGAATATAGGCACCATAGCTCAATTGTTCGGAGCTGGTGAAAGTGAATGTTCTGTTATCATGTTATGGACATATGCTTTTGCGTCGGTTGCAGTTACCCTTTGGTCAACTTTCTTCATGTGGCTAGTGGCATGA 1251 0.3981 MGFIELLSVASFPVIKVLLITAIGLFLALDNVSILEEDARKKVNQLVFYVFNPSLVGSNLAKTITFDSVVKLWFMPVNILATFILGSALGWILIKMTRPPKQMEGLILGCCSAGNLGNLLIIIIPAICEESGSPFGDSDVCYKYGMAYASLSMAIGAVFIWSYVYNIMRISSSRTEPEDNTSDASSLLKASEEISDSESHQANFSETLDPTEDVMDDVYTLLLPDAESNEKASISSKIKQCLRKISSNLNLKAIFAPSTLGAIVGFIIGIISPLRNFIIGSSAPLHVVEESAYMLGEAAIPTLTLIMGANLLKGLKGTSPPVWTIVGIIAVRYIFLPLLGVAVVKGAIHLSLVRSDALYQFVLLLQYALPPAMNIGTIAQLFGAGESECSVIMLWTYAFASVAVTLWSTFFMWLVA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00981 416 Pfam Membrane transport protein 12 407 IPR004776 GO:0016021|GO:0055085
Cca11g00981 416 PANTHER - 1 415 IPR045033 GO:0080162
Cca11g00981 416 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 415 - -
Cca11g00981 416 MobiDBLite consensus disorder prediction 174 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00981 Cca-Chr11 21304391 21311331 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00981 K24139 - gmx:100817605 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00981 11 21304391 21311331 Cca11g00981 11 21304391 21311331 ECH