Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00931 ATGTTTGTCAAGAAACTAGTTGAGAAAGCTTCCATAAAGAAGACTGGTGGAAATTCATCAGAAGGGTTAAAAGCTAGTGATGTAGATCCGCGGTTGGTATTTCATCATGGGGTGCCATCTGGTGGTGCCAAGTTCGCCTATGACTCCATTCAGAGGATACTGGCTCTTTCTACAAAGGATGGCCAGATTAAACTCTATGGGAAAGATAATGCTCAAGCCCTGATTGAATCTAGTGAGGCCTTGCCTAGCAAGTTTCTGCAGTTCATCCAGAACCAAGGGGTCCTTATAAATGTCACATCCAATAACCATATTGAGGTTTGGGACATAGACAAGAAACAGTTGTCTGATGTGTACATTGCTAAAGAAGAGATCACTAGCTTTGCGGTCATTCAACATAGCCACTATACGTACATTGGACATTACAATGGTAATATTTCAGTTTTGAAGCTTGATCAAGAACCATCATGGCATTTGGTTCAAATGAAATACACCATTCCTCTCTCGGCTTCCTATGGAAACTCTGAACTTTCTGATGACACTGTTGTGACGCATATACTGCCTCAACCAGCAGCTGAAAGCAAGAGGGTTCTCATAATCTTTCGAAATGGCCAAATGATATTATGGGATATTTGGGAAAGTAGGTCTATTTTCAGAACTGGTGGAAATATGTTGCAGCCACTGCATAATGAAACAAAAAAAGTGACTTCTGCATGTTGGGTGTGTCCTGTTGGAAGTAAAGTGGTTGTAGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATTCCTTCTCTAAATATGGGAAATGCTTCAGCATCTGAATCTAGTAATCAAAACACTCCTTCGCTCAAACTTAACTTGGGATACAAGTCAGAAAAAATTTCCATAGGATCAATAAAATGGGTTTCTGCTGGAGGAAAGGCTAGTCGACTATATGTTATGGGAGCTTCTGATTATGCAAATTCAAACTTGTCACAGGTAGTTTTGCTGAATGAGCATGCTGAATCTCGAACAATTAAGCTTGGACTTCATTTATCTGAATGCTGCATTGACATGGAGATCATATCGAGTTCAACTGAGCAAAGCAAGCATAAACAAGATTCTTTCATTTTGCTTGGGAAATCAGGCCATCTATATCTGTATGACGATAGTTTGATTGAAAGGTATCTGCTACAGTGCCAGTCTAAGTCCTCACCTTCACTACCAAAGGAAGTTATTGTAAAGATACCACTGGAAGGTTCAAGGATCACAACAGCAAAATTTATCTCCAACAATTCCAATGTGTTGACTTTTGAAGATGAGTTTTACAGACAGCTGGTCAAAAACTATCCACTTTTTGTTCCTGTTGAAACAAATCAAAAAGATGGGATTAGCCTGAGTTCTGCCAAATTTGCTGGATTTTCAAAAGTTCAAAATTTGTACATAACTGGACACAGCAATGGAGCCATAACCTTCTGGGATGCTTCATGCCCCATTTTCACTCCAATATTGCAATTGAAGCAACAGAGTGAAAATGACTGTTCATCAAGTGGTATACCCTTGACAGCATTGTGCTTCGATAGCAACTCTCCACTTCTTATTTCAGGTGACCAGAGTGGAATGGTTTGCATCTTTAGATTCAAACCTGAACCATATGCCAATAACAGCTTCATGTCTCTTACTGGAGGTACAAAGAAAGGGACTGATCATGTAATCCAAAGTGTGAAACATGTAAAGAGTAATGGTGCCATTGTTGCAATAAACATAGATCCCATCTCATTGCATCTTGCAGTTGGTTCTGATCAAGGACATGTTTCGGTTTTTAACATAGATGGCCCAACTTTGTTATACCAGAAACATTTTGCAAGTGAAATTTCTGCTGGTATCATCTCTCTGCGGTTCCTAACCTGCACTTTACATGGTTTTGAAAAAAACATTTTAGTGGTTGGAGCAAAAGATTCATCTGTTCTGGCACTAGATAAGGAAACTGGAAACACACTGGGCACGGGATCTATTCATCCTAAGAAGCCCTCTAAAGCTCTATTTATGCAGGTTTTGGATGGACAAGGTGAACCGATCACTGGATCAATTACAAAAGATGGATTAGACTTGAGCGGAAGGAATCATATTGAGGATGCAACAACAAAGCAACAGTGCATTCTGCTTTGTTCTGAGAAAGCTTTATATGTCTATTCATTAGTGCATGCGATTCAGGGGGTTAAAAAGGTTCTTTTCAAGAAAAAGTTTCATTCCTCTTCGTGTTGCTGGGCATCCACATTTTATAGCCCTTCTGATATTGGCCTTATACTCATTTTCACCGGTGGAAAAGTAGAATTAAGGTCTTTGCCAAAGTTATCTCTGATTATGGAGAGTTCAATTAGAGGTTTCAGTTTTTCTCCTCCAACATCGAAGTCATTTTCTGACAACCAGATATGCTGTTCATCCAAAGGAGATCTTGTTTTGGTGAATGGTGACCAAGAAATTTTTGCTGTCTCACTGTTGGCCCAAAGGAATATTTTTAGGCTTTTGGACTCTATCAGCTGCATCTACAGTAAAGAAATGATGCTGTCACAAGAAGAGCTTGTCCCTGGCCCAGTCATTCATAAGGAAAAGAAAAAGGGTATATTCAGCTCTGTTATTAAAGATTTTACTGGCAGTAAAGAAAAGCATGCTCCCATCATGGAAACAGAAGATTCTAAAGAAAGTATCCAGGAACTCTCAGCTATCTTTTCAAATGAAAATTTTCCATGTAATGCTGACAACAATGATAATCTGACTGTTGATGAAGATGGGCCTGAATTAAACATAGATGACATTGACCTAGACGATCATGATGAAAAACGCAAAGATCAAAGTATATTGGGGGCTCTTAATAAGAAGAAATTGACTGGAAAGTTTCAGGCTCTAAAGGGAAGATTAGAAGAGATGAAGGGCAATATCCACAAAACATCAAGTAAGGAAGAGCAACAAGATGAGCAAGCTGGTGCAGTCGATCAAATTAAGAAGAAATATGGGTTTTCTTCTTCTTCCAATTTTGTACCGCAGGAAACAACTGTAGCTAAATTAGCAGTAAGCAAGCTGCAGGAGAACGTAAAAAAATTGCAGGGTATCAACACTCGAGCCACGGAAATGCAAGATAAAGCAAAATCATTTTCATCATTGGCAAACCAAGTGCTGCGAACTGCTGAACAAGATAGGCGGAACTCATAA 3186 0.3933 MFVKKLVEKASIKKTGGNSSEGLKASDVDPRLVFHHGVPSGGAKFAYDSIQRILALSTKDGQIKLYGKDNAQALIESSEALPSKFLQFIQNQGVLINVTSNNHIEVWDIDKKQLSDVYIAKEEITSFAVIQHSHYTYIGHYNGNISVLKLDQEPSWHLVQMKYTIPLSASYGNSELSDDTVVTHILPQPAAESKRVLIIFRNGQMILWDIWESRSIFRTGGNMLQPLHNETKKVTSACWVCPVGSKVVVGYNNGELFIWSIPSLNMGNASASESSNQNTPSLKLNLGYKSEKISIGSIKWVSAGGKASRLYVMGASDYANSNLSQVVLLNEHAESRTIKLGLHLSECCIDMEIISSSTEQSKHKQDSFILLGKSGHLYLYDDSLIERYLLQCQSKSSPSLPKEVIVKIPLEGSRITTAKFISNNSNVLTFEDEFYRQLVKNYPLFVPVETNQKDGISLSSAKFAGFSKVQNLYITGHSNGAITFWDASCPIFTPILQLKQQSENDCSSSGIPLTALCFDSNSPLLISGDQSGMVCIFRFKPEPYANNSFMSLTGGTKKGTDHVIQSVKHVKSNGAIVAINIDPISLHLAVGSDQGHVSVFNIDGPTLLYQKHFASEISAGIISLRFLTCTLHGFEKNILVVGAKDSSVLALDKETGNTLGTGSIHPKKPSKALFMQVLDGQGEPITGSITKDGLDLSGRNHIEDATTKQQCILLCSEKALYVYSLVHAIQGVKKVLFKKKFHSSSCCWASTFYSPSDIGLILIFTGGKVELRSLPKLSLIMESSIRGFSFSPPTSKSFSDNQICCSSKGDLVLVNGDQEIFAVSLLAQRNIFRLLDSISCIYSKEMMLSQEELVPGPVIHKEKKKGIFSSVIKDFTGSKEKHAPIMETEDSKESIQELSAIFSNENFPCNADNNDNLTVDEDGPELNIDDIDLDDHDEKRKDQSILGALNKKKLTGKFQALKGRLEEMKGNIHKTSSKEEQQDEQAGAVDQIKKKYGFSSSSNFVPQETTVAKLAVSKLQENVKKLQGINTRATEMQDKAKSFSSLANQVLRTAEQDRRNS 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00931 1061 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1059 - -
Cca11g00931 1061 SMART WD40_4 220 260 IPR001680 GO:0005515
Cca11g00931 1061 SMART WD40_4 560 601 IPR001680 GO:0005515
Cca11g00931 1061 SMART WD40_4 27 67 IPR001680 GO:0005515
Cca11g00931 1061 SMART WD40_4 499 538 IPR001680 GO:0005515
Cca11g00931 1061 SMART WD40_4 451 486 IPR001680 GO:0005515
Cca11g00931 1061 Gene3D - 457 841 IPR015943 GO:0005515
Cca11g00931 1061 CDD R-SNARE_STXBP5_6 991 1052 - -
Cca11g00931 1061 Gene3D - 177 434 IPR015943 GO:0005515
Cca11g00931 1061 SUPERFAMILY WD40 repeat-like 51 603 IPR036322 GO:0005515
Cca11g00931 1061 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1059 - -
Cca11g00931 1061 SUPERFAMILY WD40 repeat-like 466 814 IPR036322 GO:0005515
Cca11g00931 1061 Coils Coil 951 971 - -
Cca11g00931 1061 Pfam Lethal giant larvae(Lgl) like, C-terminal 713 831 IPR013905 -
Cca11g00931 1061 Coils Coil 1016 1036 - -
Cca11g00931 1061 Gene3D - 25 175 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00931 Cca-Chr11 19503101 19518790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00931 - - gmx:100811900 1824.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00931 11 19503101 19518790 Cca11g00931 11 19503101 19518790 ECH