Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00929 ATGTACGGTCCCCGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGGACAGGCAGCTTACCTTATGGATATGCCGGTGGCTTCCAGCCCCCTCCCTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTCAACTGCACTGACATTGACATCTTGAAGTTCTTTGCTGGATTGACCATTGTGGATGTGTTGCTGGTCAACAAGAGTGGCCGGTTCTCAGGCGAGGCCTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCGCTGCAGAGAGATCGCCAGAACATGGGCCGCAGATATGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTATAATGCTGTTGCTTCTGAGATTAATTATGAAGGAATATATGATACCGATTACCATGGTAGTAGCCCTCCACCGTCCCGGTCAAAGAGGTTCAATGATAAAGACCAAATGGAGTACACTGAGATATTGAAGATGCGTGGACTTCCATTCCAAGTGACAAAATCTCAAATTGTTGAGTTCTTTAAAGATTTCAAGCTGATAGAAGATAGGGTACACATTGCGTGTCGCCCTGATGGGAAAGCTACTGGAGAGGCATATGTGGAGTTTGTTTCTACTGAGGAGGCTAAGAGGGCAATGTCCAAGGATAAAATGACCATAGGATCAAGGTATGTGGAGCTCTTTCCGTCTACACCAGATGAAGCTAGACGGGCCGAATCAAGATCAAGGCAGTAA 795 0.4792 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVASEINYEGIYDTDYHGSSPPPSRSKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSTEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00929 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 176 248 - -
Cca11g00929 264 Gene3D - 56 140 IPR012677 -
Cca11g00929 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 122 IPR000504 GO:0003723
Cca11g00929 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 245 IPR000504 GO:0003723
Cca11g00929 264 SMART rrm1_1 58 127 IPR000504 GO:0003723
Cca11g00929 264 SMART rrm1_1 176 248 IPR000504 GO:0003723
Cca11g00929 264 SUPERFAMILY RNA-binding domain, RBD 54 254 IPR035979 GO:0003676
Cca11g00929 264 Gene3D - 158 264 IPR012677 -
Cca11g00929 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Cca11g00929 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 58 127 - -
Cca11g00929 264 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 264 - -
Cca11g00929 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00929 Cca-Chr11 19435708 19438524 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00929 K12898 - gmx:100816391 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00929 11 19435708 19438524 Cca11g00929 11 19435708 19438524 ECH