Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00923 atgggttttccgctgagttcttctaatcgTTCTGAGGCAACTGCTGGTTCTCCGTTGCCCAATACTAATCCACTTCCAAATCCTTGGTCCTCAACTGGAACTGGAGGTGCTCAAAGTCAAAATAACACCAGAAGGTCATCAACCACTGGTGGGGATGCTAGGCAGCAAGGACCTACTGGCTTGGGAGGGCTTGGTCTGCCAGACCTTGAAAGCATGCTGGGTGGAAGTGCTATGCCAGATGCTGCTTTATTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTTGGTGTTAATTCTGAGCAGCGCGGCATGCCGGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTTCTTCGTTTGTTTTCTTCACCCGAGACACTGCAGCAACTTTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGTCAGCAACAATCGACACGGGAATCTGGTCAAACTGGCGGGGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGGTCTGGTAGCCTTGCTGTTCCTAATAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAAATGGGATTCTTTGACACACAGGAGAACATAAGGGCTCTCATTGCCACTTCGGGGAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGatttaactacaacagaagaagcgcatcaacctccagttttaacacattcaaatatgatagctcatcagatgaaggtccattactacCTCAATTTTGGAGCAATACTCCACATTATACTTACATTGATTGGTCTCATCCAAATCAAGAGATGTGGTATGGTGGGTTAG 924 0.4037 MGFPLSSSNRSEATAGSPLPNTNPLPNPWSSTGTGGAQSQNNTRRSSTTGGDARQQGPTGLGGLGLPDLESMLGGSAMPDAALLTQLMQNPAISQMMQSMLSNPQTLNQILGVNSEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTRESGQTGGGTGPMNNLGLEMLSSMFGGLGSGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSDLTTTEEAHQPPVLTHSNMIAHQMKVHYYLNFGAILHIILTLIGLIQIKRCGMVG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00923 307 MobiDBLite consensus disorder prediction 1 72 - -
Cca11g00923 307 CDD UBA_PLICs 212 250 - -
Cca11g00923 307 SMART uba_6 212 250 IPR015940 -
Cca11g00923 307 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 206 251 IPR015940 -
Cca11g00923 307 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 7 252 - -
Cca11g00923 307 SMART CBM 113 148 IPR006636 -
Cca11g00923 307 SMART CBM 57 110 IPR006636 -
Cca11g00923 307 SUPERFAMILY UBA-like 208 250 IPR009060 GO:0005515
Cca11g00923 307 Pfam UBA/TS-N domain 212 248 IPR015940 -
Cca11g00923 307 PANTHER UBIQUILIN 7 252 - -
Cca11g00923 307 MobiDBLite consensus disorder prediction 1 55 - -
Cca11g00923 307 Gene3D - 194 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00923 Cca-Chr11 19231451 19242420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00923 K04523 - gmx:100776447 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00923 11 19231451 19242420 Cca11g00923 11 19231451 19242420 ECH