Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00918 ATGGCCAGAAGATCCCTACCCCTCCTCAGGCACCTCCTGGCGCGATCCACGCCGCGCCGCATCCAAACCCGATCCGTTACGTACATGCACCGGCCGGGCGACGGGACGCCGCGCGCGGTGACGCTGATCCCGGGCGACGGAATCGGGCCGCTGGTGACGGGCGCGGTGGAGCAGGTGATGGCGGCGATGCAGGCGCCGGTGTTCTTCGAGAAGTTCGAGGTCCACGGGAACATGAAGGCGATGCCGCAGAAAGTGATGGACTCCATCCGGCGCAACAAGGTGTGCCTGAAGGGCGGCCTCGTGACCCCCATGGGCGGCGGCGTTAGTTCCCTGAATGTGCAGCTGCGGAAGGAGCTCGATCTCTACGCCTCCCTCGTTAACTGCATCAACCTCCCTGGATTGCGCACGCGCCACGACAACGTCGACATCGTCGTCATCAGGGAGAACACTGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCATTCCCGGCGTCGTCGAAAGCCTTAAGGTAATAACGAAGTTCTGTTCAGAGCGTATTGCTAATTATGCATTTGAGTATGCTTACCTAAACAACAGAAAGAAGGTGACTGCCGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTTTTGGAATCTTGTCGAGAGGTTGCCAAAAAGTACACTGGAATCAAGTATAACGAAATTATTGTAGATAATTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTGACCCCAAATCTTTATGGAAATCTAATTGCTAATACTGCGGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAATGTTGGGGCTGAGCATGCAGTGTTTGAGCAAGGTGCCTCGGCAGGAAATGTTGGCAATGATAAAATATTGGAACAAAAAACTGCCAATCCAGTGGCGCTTCTTATGTCATCAGCTATGATGCTTAGGCATCTTCAGTTTCCTGCATTTGCTGACCGCTTGGAAACTGCTGTGGAACAAGTCATTTTGGAGGGCAAATATCGAACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAAATTGTGGATGCAGTCATAGATGCTTTAGATTGA 1104 0.5263 MARRSLPLLRHLLARSTPRRIQTRSVTYMHRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMAAMQAPVFFEKFEVHGNMKAMPQKVMDSIRRNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCINLPGLRTRHDNVDIVVIRENTEGEYSGLEHEVIPGVVESLKVITKFCSERIANYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYTGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNDKILEQKTANPVALLMSSAMMLRHLQFPAFADRLETAVEQVILEGKYRTKDLGGTSTTQEIVDAVIDALD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00918 367 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 36 365 IPR004434 GO:0006099
Cca11g00918 367 SMART Iso_dh_2 39 362 IPR024084 -
Cca11g00918 367 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 365 - -
Cca11g00918 367 Pfam Isocitrate/isopropylmalate dehydrogenase 40 362 IPR024084 -
Cca11g00918 367 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 38 366 - -
Cca11g00918 367 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 3, MITOCHONDRIAL 1 365 - -
Cca11g00918 367 Gene3D Isopropylmalate Dehydrogenase 22 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00918 Cca-Chr11 19012466 19017945 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00918 K00030 - gmx:100777867 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00918 11 19012466 19017945 Cca11g00918 11 19012466 19017945 ECH