Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00917 ATGTTCTGGACACGTTCTCTAAGGCTTCTCAGATCAACTCGCATTTACTCATCCCATCATCATTTACGCAAAGTTAGTAACTTTTCCAAGGACCATGATCCGGGTTCGTGGGAATCAATGGAGGGTCTTCTTCGTTGCTCTGCCAATTGTGTTCCTCTGTCTCCTATGATCTTCCTAGAGAGAGCAGCCAAGGTTTGCAGAGACCGAACATCGCTTGTGTATGGTTCTTTGGAGTATAATTGGGGTCAAACCCACCAACGTTGTCTTAAACTTGCTTCTGCCTTGACCCAGTTGGGAATTTCACGTGGGGATGTGGTTGCCACTCTATCCCCTAATGTCCCTGCAATGTATGAGTTACATTTTGCTGTCCCAATGGCTGGAGCCATTCTTTGCACCCTCAACTCACGCCTAGATGCAGCTATGGTTTCAGTCCTTCTGGAGCATTCACAAGCAAAGGTCGTTTTTGTAGACTACCAACTACTTCAAATTGCACAGGAAGCATTGGACCTGCTACGAAAAGAGGCTAGAGAATTGCCAATTTTAGTTCTAGTTACGGACTCTGATTGCCCATCTACCATTGACATTAGATCAATTAGTTACGAGTATGAGAGACTTCTGGCTGATGGGCACAATGGTTTTGACATAGTGAGGCCCCACAGTGAATGGGATCCTATAAGTATAAATTACACTTCTGGCACCACATCTAGGCCTAAAGGAGTTGTCTACAGTCACAGGGGTGCTTATCTGAACACTCTAGCAACAGTTCTACTCTTTAGAATGGACCTATTTCCTGTTTATCTTTGGAATGTTCCAATGTTCCACTGCAACGGTTGGTGCCTCCCTTGGGGAGTGGCATCACAATTTGGGATCAATGTTTGTGTTAGGAAGGTCTCTCCAAAGACCATTTTTGACAATATAGCTCAGCATAAGGTGACACACATGGCAGGAGCACCAACAGTGCTGAACATGATTGTGAACTCTGCGGCGGCGGATCGGAAGCCGATCGATCACAAGGTGTTGGTGATGACCGGCGGTTCACCGCCGCCGCCGCAGATCATTTCCAAGATGGAGGAGTTTGGCTTTAGCATCTCTCACCTGTATGGCCTCACAGAAACATATGGTCCAGGCACTTTCTGTGCATGGAGACCTGAGTGGGACTTTTTGCCCCATGAAGAGAGATCAAAGATGAAAGCCAGGCAGGGTGTATCCCATGTGGGTTTGGAGGGAATTGATGTGAAAGATCCTGCCACAATGGAAAGTGTTCCATCTGATGGCAAAACAATTGGGGAGGTAATGTTTAGAGGGAACACAGTGATGAGTGGATATTTTAGAGACTTAAAAGCAACAGAAGAAGCTTTCAAAGAGGGGTGGTTTCATACTGGGGATCTAGCTGTGAAACACTCTGATGGTTACATAGAAGTTAAGGACAGATTGAAGGACATAATCATCTCAGGGGGAGAGAATATTAGCTCAGTTGAAGTAGAAACAGTTTTGTATAGCCACCCAGCTGTTCTTGAAGCTGCAGTTGTTGCCAGGCCTGATGATCATTGGGGTCAAACACCTTGTGCTTTTGTCAAGTTGAAAGAAGGGTTTGATGTAGATTCTCAAGAAATAATAAACTTTTGCAGGGACCATTTGCCCCATTACATGGCTCCTAAAACAGTCATTTTTCAAGATATGCCAAAAACTTCAACAGGGAAGATACAGAAGTATGTTCTAAGGGAAATAGCCAAGGCTTTGGGCAGCAATTCGTAA 1755 0.4507 MFWTRSLRLLRSTRIYSSHHHLRKVSNFSKDHDPGSWESMEGLLRCSANCVPLSPMIFLERAAKVCRDRTSLVYGSLEYNWGQTHQRCLKLASALTQLGISRGDVVATLSPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSVLLEHSQAKVVFVDYQLLQIAQEALDLLRKEARELPILVLVTDSDCPSTIDIRSISYEYERLLADGHNGFDIVRPHSEWDPISINYTSGTTSRPKGVVYSHRGAYLNTLATVLLFRMDLFPVYLWNVPMFHCNGWCLPWGVASQFGINVCVRKVSPKTIFDNIAQHKVTHMAGAPTVLNMIVNSAAADRKPIDHKVLVMTGGSPPPPQIISKMEEFGFSISHLYGLTETYGPGTFCAWRPEWDFLPHEERSKMKARQGVSHVGLEGIDVKDPATMESVPSDGKTIGEVMFRGNTVMSGYFRDLKATEEAFKEGWFHTGDLAVKHSDGYIEVKDRLKDIIISGGENISSVEVETVLYSHPAVLEAAVVARPDDHWGQTPCAFVKLKEGFDVDSQEIINFCRDHLPHYMAPKTVIFQDMPKTSTGKIQKYVLREIAKALGSNS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00917 584 SUPERFAMILY Acetyl-CoA synthetase-like 48 579 - -
Cca11g00917 584 Gene3D - 479 581 IPR045851 -
Cca11g00917 584 PANTHER ACYL-ACTIVATING ENZYME 18 582 - -
Cca11g00917 584 Gene3D - 44 478 IPR042099 -
Cca11g00917 584 Pfam AMP-binding enzyme C-terminal domain 493 567 IPR025110 -
Cca11g00917 584 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Cca11g00917 584 Pfam AMP-binding enzyme 60 484 IPR000873 -
Cca11g00917 584 PANTHER ACYL-ACTIVATING ENZYME 2-RELATED 18 582 - -
Cca11g00917 584 CDD ttLC_FACS_AEE21_like 51 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00917 Cca-Chr11 18992633 18996531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00917 116 584 Miscellaneous Gene Families AT1G20560 62.633 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00917 - - gmx:100500429 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00917 11 18992633 18996531 Cca11g00917 11 18992633 18996531 ECH