Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00916 ATGTCTCAGTCTGCTTCTGAAAACACAAGTGCGAGAACTCGCACGAGAACGAGAACAAGCTTATGGTTCTCTGCATCGTTTTACGCTCTCGTTCTCCCTGTGCTGGTGGCTGCGATTCTCTACCGGCTCGAACCCTTCCAACCGGTTCTTTTGCCGGTTCCGCTGAGCCCGTCCACCGTGGTGGTTCCCGCACGTAACAATCGCGTGCTGCGAGGGGCTGAAGCTGTGGCTCAGGGACAAGTGCAGGGTCCCGAAGACTTGGCCTATGACGCTGCGACACGTGTCATCTACACTGGATGCGAGGATGGGTGGATCAAGCGATTCACGGTGAACGACTCGGTGGCTGACTCGGTCGTTGAAAAATGGGTCAACACCGGCGGAAGACCACTTGGTATAGCTTTGAAACGGAATGGTGATCTCATCGTTGCCGACGCCCAAAAGGGACTACTGAGAGTGACGAGTGAAAAGGAGGTTGAGCTGTTGGTCGATGAGTTTGAAGGATTAAAATTCAAATTAACAGATGAAGTTGACATAGGAGATGATGGTACCATTTATTTCACGGATGCATCACACAAATACTCTCTGAAAGATGCTCTCTTAGACATCTTAGAAGGCAAGCCTAATGGCAGATTATTGAGCTATAATCCAGCAACAAAGAAAACAACCCTACTTGTCCAAAATCTCTACTTTGCCAATGGGGTTGCCGTCTCACCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTTCTAATGAGATGCAATAAATATCACTTACAGGGCCCTAAAAAAGGAACCATAGAGAAGTTCTGTGACGTACCTGGCATGCCTGACAACATTCATTATGATGATGGACAACGACAGTATTTGATCGCAATATTCACGGCCCTTGCTCCTGAATTGGATATAGCATATAGATACCCTTTCATTAGGAAGGCCGTAGCAATTGTGATGAAGTATGTACTGAATCTATCTTTCTCGAAGAATGGAGGAGTTCTGGTCGTGGATTTAGAAGGAAAACCAACTGCACATTATTATGATCTCAAATTAGGATTGACTAGTGCAGTTAAAATCGGGAATCATATATATGGTGGTTCCATTTTATACCCTTTTGTAACACGTCTTGATATTGAGAAGTACCCTGCTCTCCCCACAGTTTAA 1158 0.4568 MSQSASENTSARTRTRTRTSLWFSASFYALVLPVLVAAILYRLEPFQPVLLPVPLSPSTVVVPARNNRVLRGAEAVAQGQVQGPEDLAYDAATRVIYTGCEDGWIKRFTVNDSVADSVVEKWVNTGGRPLGIALKRNGDLIVADAQKGLLRVTSEKEVELLVDEFEGLKFKLTDEVDIGDDGTIYFTDASHKYSLKDALLDILEGKPNGRLLSYNPATKKTTLLVQNLYFANGVAVSPDQQFVVFCESVLMRCNKYHLQGPKKGTIEKFCDVPGMPDNIHYDDGQRQYLIAIFTALAPELDIAYRYPFIRKAVAIVMKYVLNLSFSKNGGVLVVDLEGKPTAHYYDLKLGLTSAVKIGNHIYGGSILYPFVTRLDIEKYPALPTV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00916 385 Pfam Strictosidine synthase 174 260 IPR018119 GO:0009058|GO:0016844
Cca11g00916 385 Gene3D - 67 377 IPR011042 -
Cca11g00916 385 PANTHER STRICTOSIDINE SYNTHASE-RELATED 19 375 - -
Cca11g00916 385 Pfam Strictosidine synthase-like, N-terminal 66 108 - -
Cca11g00916 385 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 5-LIKE 19 375 - -
Cca11g00916 385 SUPERFAMILY Calcium-dependent phosphotriesterase 67 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00916 Cca-Chr11 18982561 18992415 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00916 - - gmx:100778397 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00916 11 18982561 18992415 Cca11g00916 11 18982561 18992415 ECH