Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00819 ATGAGCCATTCGGGCATGGAGGAGGAAGAAGTACCGGACGTTTCATGCGAGCTGGAAAATGTTCAAGGTTTAGTGGACGCCCTTACCGCCGTTCGGTGGAAGCGCCAGCAGGACGCTGTGCTCGAGTTGTCCGAACATGGCATCGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTGTATCTCAAACGAGAGCTATTCATTCGCTATGATTACAATGCACGGGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTGGTGGATTGTTTGAATGCCTTCACGGTTCCTGGCCAATCAAGCGTTATTCAGATTCAATACCCAGGTTCTGATATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGAATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGACAAACCCTTTAACCTTTACTGTTAAATCCGCAGCACTGAAGGAAGCCATTGAGGATCTTGAGTGGCCTGGATCAAGCATCCAGATTATTCTACAGCCCGATCCTCCTTCTGTTACGTTGAGAGCTGAAGGACATGGAGACTTGCAGATAGATTTCTTGTATTACGCGAATTCCGAACTCTTGGTAGCATTTCAGTGTGATCATCCGGCTTCTTTCAGGTACAAATATAAATTTCTCAGAGCAACAACTTCTAATATGCCTACCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTTCAGCATCTGGTTTCAATTGCCAAACCATCTATGTCACACTCTTATGTCGATTCTGTAAGCTATCAGCAACCAGGTCGGATAGCTCATATTGAGTTCTATGTGAAACCAGAGGAAAGTGAGTAA 900 0.4489 MSHSGMEEEEVPDVSCELENVQGLVDALTAVRWKRQQDAVLELSEHGIVLIVEESGCLQAKVYLKRELFIRYDYNARGRPRFGVSLGHLVDCLNAFTVPGQSSVIQIQYPGSDMQLLLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGTNPLTFTVKSAALKEAIEDLEWPGSSIQIILQPDPPSVTLRAEGHGDLQIDFLYYANSELLVAFQCDHPASFRYKYKFLRATTSNMPTSVIKENRGSKLSIGRGGMLKVQHLVSIAKPSMSHSYVDSVSYQQPGRIAHIEFYVKPEESE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00819 299 SUPERFAMILY DNA clamp 154 262 - -
Cca11g00819 299 PRINTS Repair protein Rad1/Rec1 family signature 16 33 IPR003021 GO:0000077
Cca11g00819 299 PRINTS Repair protein Rad1/Rec1 family signature 60 76 IPR003021 GO:0000077
Cca11g00819 299 PRINTS Repair protein Rad1/Rec1 family signature 224 241 IPR003021 GO:0000077
Cca11g00819 299 PRINTS Repair protein Rad1/Rec1 family signature 283 298 IPR003021 GO:0000077
Cca11g00819 299 CDD PCNA 16 263 - -
Cca11g00819 299 Pfam Repair protein Rad1/Rec1/Rad17 15 261 IPR003021 GO:0000077
Cca11g00819 299 Gene3D - 12 296 - -
Cca11g00819 299 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD1 7 298 IPR003021 GO:0000077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00819 K02830 - gmx:100805068 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00819 11 15746434 15751519 Cca11g00819 11 15746434 15751519 ECH