Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00762 ATGGCCTTCTGTGGCACCTTTGTTAAGCCTTCTGTGTATCCATGCCACAAACACTTAGTTCCAAGTCCAAACCATGGCTGCATAAACAAGTTCTATGTGAGAGCTTCAGCAAGTGGCTCAGGTGATGGGGAGAGGACTATTATAAAGAAAGAGAAAGATGAGTGGAAGATCAAGTTCTCAGCAGAGAAACCAGAAACACCATTGTTGGACACAATCAATCACCCAATTCACATGAAGAATCTGACAGCGCAGGATCTTGAGCAACTTGCAGCAGAGCTGAGGGCAGATATTGTACACAGTGTGTCAAATACTGGAGGGCATCTTAGCTCAAGTTTGGGAGTGGTGGAATTAACAGTGGCTTTGCATCATGTTTTTGACACCCCTGAAGACAAAATTATATGGGATGTTGGCCATCAGGCATACCCACACAAGATTCTGACAGGAAGAAGGTCAAGGATGCACACCATCAGAAAGACTTCAGGGTTAGCTGGATTTCCTAAAAGGGATGAAAGTGTTCATGATGCTTTTGGGGCAGGGCACAGTTCAACAAGCATATCTGCTGGTCTCGGCATGGCTGTTGCACGTGATCTATTGGGAAAGAACACCAACATAGTTTCAGTGATTGGAGATGGGGCGATGACAGCAGGACAAGCTTACGAGGCAATGAACAACGCAGGGTTCCTTGATACTAACATGATAGTTATACTTAATGACAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGCCCTGCAACTCCCGTTGGAGCTCTCAGTAGTGCTTTGAGCAAAATTCAAGCAAGCACCCAATTCCGCAGACTTAGAGAAGCTGCAAAGAGCATCACAAAACAATTAGGAGGACAAACACACCAAGTTGCTGCAAAAGTAGATGAGTATGCAAGAGGCATGATCAGCGGTCCTGTCGACGGTCATAGCATCGAAGATCTGGTCACCATCTTTGAAAAAGTCAAAGCAATGCCTGCCCCTGGTCCAGTTTTGATTCACATTGTGACAGAAAAAGGAAAGGGATACCCCCCAGCAGAAATAGCAGATGATAAAATGCATGGTGTCGTGAAGTTTGATCCAAAAACAGGCCACCAATTTAAGGCAAAATCCCCTACACTTTCATACACACAATACTTTGCTGAGTCTTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTGGCTATTCACGCAGCAATGGGTGGTGGTACTGGCCTCAATTATTTCCAGAAAAGGTTTCCCGAACGATGTTTTGATGTGGGGATAGCTGAACAACATGCTGTCACATTTGCAGCTGGTTTAGCTGCTGAAGGTCTCAAGCCATTTTGTGCCATTTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCATGATGTTGATCTTCAAAAGCTACCTGTTCGATTTGCTATGGATAGAGCTGGTTTGGTTGGAGCTGATGGACCAACGCATTGTGGTGCATTTGACATCACTTACATGGCTTGCCTCCCCAACATGGTGGTCATGGCTCCCTCTGATGAAGCTGAACTCATGCACATGGTTGCAACCGCAGCAGCTATCGATGACAGACCAAGTTGCTTTAGATTTCCAAGGGGAAATGGAATTGGAGCTACTCTTCCATTCAATAACAAAGGAACCCCACTTGAGATAGGGAAGGGAAGAATTCTGACAGAAGGCAGCAGAGTTGCTATTTTGGGATATGGTTCTGCAGTCCAACAATGCCTCCAAGCCTCAGAAATGCTTAAAGAACTAGACATTTTTGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTCATTAGGCTACTAGCCAAAGAGCATGAAATGCTCCTCACAGTGGAAGAGGGTTCCATTGGAGGTTTTGGATCACATGTTTCACAATTCTTGAGCTTATCCGGTATCCTAGATGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGATAGGTACATCGATCATGGATCACCGCAAACTCAGATTGAAGAAGCAGGGCTTTCATCGAAAGACATTGCGGCCACAGTCCTATCTCTTCTTGAAAGGCCAAAAGAAGCTCTTCTGTTCAAATAA 2091 0.4476 MAFCGTFVKPSVYPCHKHLVPSPNHGCINKFYVRASASGSGDGERTIIKKEKDEWKIKFSAEKPETPLLDTINHPIHMKNLTAQDLEQLAAELRADIVHSVSNTGGHLSSSLGVVELTVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGAGHSSTSISAGLGMAVARDLLGKNTNIVSVIGDGAMTAGQAYEAMNNAGFLDTNMIVILNDNKQVSLPTATLDGPATPVGALSSALSKIQASTQFRRLREAAKSITKQLGGQTHQVAAKVDEYARGMISGPVDGHSIEDLVTIFEKVKAMPAPGPVLIHIVTEKGKGYPPAEIADDKMHGVVKFDPKTGHQFKAKSPTLSYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGATLPFNNKGTPLEIGKGRILTEGSRVAILGYGSAVQQCLQASEMLKELDIFVTVADARFCKPLDTDLIRLLAKEHEMLLTVEEGSIGGFGSHVSQFLSLSGILDGPLKWRAMMLPDRYIDHGSPQTQIEEAGLSSKDIAATVLSLLERPKEALLFK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00762 696 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 339 IPR005477 GO:0008661|GO:0016114
Cca11g00762 696 Gene3D - 376 543 - -
Cca11g00762 696 ProSitePatterns Transketolase signature 2. 482 498 IPR020826 -
Cca11g00762 696 ProSitePatterns Transketolase signature 1. 94 113 IPR005474 -
Cca11g00762 696 Pfam Transketolase, C-terminal domain 555 678 IPR033248 -
Cca11g00762 696 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 696 IPR005477 GO:0008661|GO:0016114
Cca11g00762 696 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 438 IPR029061 -
Cca11g00762 696 SMART Transket_pyr_3 376 541 IPR005475 -
Cca11g00762 696 Gene3D - 60 348 - -
Cca11g00762 696 SUPERFAMILY TK C-terminal domain-like 550 686 IPR009014 GO:0003824
Cca11g00762 696 Pfam Transketolase, pyrimidine binding domain 376 537 IPR005475 -
Cca11g00762 696 CDD TPP_DXS 105 345 IPR005477 GO:0008661|GO:0016114
Cca11g00762 696 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 696 - -
Cca11g00762 696 CDD TPP_PYR_DXS_TK_like 382 535 - -
Cca11g00762 696 Gene3D - 555 687 IPR009014 GO:0003824
Cca11g00762 696 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 687 IPR005477 GO:0008661|GO:0016114
Cca11g00762 696 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 71 686 IPR005477 GO:0008661|GO:0016114
Cca11g00762 696 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 373 564 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00762 Cca-Chr11 13925451 13929993 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00762 294 634 Acyl Lipid Metabolism Gene Families AT3G13450 22.599 8.95e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00762 K01662 - gmx:100798930 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00762 11 13925451 13929993 Cca11g00762 11 13925451 13929993 ECH