Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g00729 | ATGGAACCcccgaagcccgaaaccgagcccgaagcccacgcccCCAACGGCCACTCCACCGCCCCCAGTGATGGATCGGGATCGGAACAGCGCACTCGGAAGGAACGCACCGCATCGTCCGGTAGCACGAAAAAGTCCGTGCACTGGAGCCCCGAATTAGTTACAGAATCCACCTTCACGTCTTCCCCTCGCGAATCGCGCTCCAATCCATACTTTTCCAACTCCTCTTCTTTCTCTCAATCCCCCTCCCCCTCCTTCATGGAGACGGTGGTGACCGTTCGCAATGTGCTCGGAAGATGGGGTCAGAAGGTGGGAGAGGCTACTAAGAAGGCTGAGAGTCTCGCTGGGAACACGTGGCAGCACTTGAAAACAAGTCCTAGCTTTACTGAAGCTGCTATGGGGAGAATTGCCCAGGGAACAAAGGTCCTGGCAGAAGGTGGATATGAGAAGATTTTCCTGAATACATTTGAGACAGGTCCAGAGGAACGGCTCAAGAATTCTTTTGCATGTTATCTATCCACGTCAGCTGGTCCAGTAATGGGAATTCTGTATATATCCACGGCAAAGATTGCATATTCTAGTGACAATCCTATTTCCTATAGAACTGAGAGCCAAATGGAATGGAGCTATTATAAGGTAGTCATTCCATTACACGAGCTAAAATCAGTGAATCCTTCATCAAACACGACCAATCCTGCTGAAAAGTACATCCAGGTGATCTCGGTAGACAATCATGAATTTTGGTTTATGGGCTTCTTGAACTACGATGGTGCTGTGGAGTCTCTGGAAGAAGCTCTTCAAGCTGGCAAACATATACAATCAGAAGCATAG | 831 | 0.4633 | MEPPKPETEPEAHAPNGHSTAPSDGSGSEQRTRKERTASSGSTKKSVHWSPELVTESTFTSSPRESRSNPYFSNSSSFSQSPSPSFMETVVTVRNVLGRWGQKVGEATKKAESLAGNTWQHLKTSPSFTEAAMGRIAQGTKVLAEGGYEKIFLNTFETGPEERLKNSFACYLSTSAGPVMGILYISTAKIAYSSDNPISYRTESQMEWSYYKVVIPLHELKSVNPSSNTTNPAEKYIQVISVDNHEFWFMGFLNYDGAVESLEEALQAGKHIQSEA | 276 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g00729 | 276 | CDD | PH-GRAM_GEM | 161 | 267 | - | - | |
| Cca11g00729 | 276 | MobiDBLite | consensus disorder prediction | 42 | 85 | - | - | |
| Cca11g00729 | 276 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Cca11g00729 | 276 | Pfam | GRAM domain | 152 | 267 | IPR004182 | - | |
| Cca11g00729 | 276 | SMART | gram2001c | 150 | 227 | IPR004182 | - | |
| Cca11g00729 | 276 | PANTHER | GEM-LIKE PROTEIN 2 | 32 | 270 | IPR037848 | - | |
| Cca11g00729 | 276 | PANTHER | GEM-LIKE PROTEIN 3-RELATED | 32 | 270 | - | - | |
| Cca11g00729 | 276 | Gene3D | - | 148 | 268 | IPR011993 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g00729 | Cca-Chr11 | 12771097 | 12775524 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g00729 | - | - | gmx:100784284 | 445.662 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca11g00729 | 11 | 12771097 | 12775524 | Cca11g00729 | 11 | 12771097 | 12775524 | ECH |