Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00705 atgTGTGGCACCAAAGTAAGCGCAATTGAATTGCCAAAATACACAATCATATTGTCTGAATCAGATTTTCAGATCAGACTCTACAATGAATCCTCATGGATGTCAGCTCGTGTTTCTGGAACATCCTTCGAACAGGCCTCTAAAACTGGATTTCACAGATTGTATGAATATATTCATGGTGCCAATTCGGATTCTTCAAAAATTGCATTCACTGCTCCAGTCTTAACGAGTGTGCCCTCGTCACCCCCTGGGGATGGCTACACTGTAAGAATGTTCATATCAAGTCACTTTGAGGGCAATCCTCCAACTCCCAATCCTGAACTGAAGTTGGGCATAGAGAAATGGAAACCTCAGTGCTTCGCAGTTCGCAAGTTTAGTGGGGACTCAAGGTCCTTTCCATTGGTAGATACTCATAGCCCAACAAAGGCCCATACTGAATTGCCTCATGCCCCTACTGTCATGGCTACACCAGAGGGTAGCTCCAAGAGGTCTCGTCAACAACCCCAGCACCTGAAGGATTATGTTGTCACGTGTCCCTCCTCCCGTAGAAAGGGCAATTCTGTTAGAAGGGAATGA 576 0.4549 MCGTKVSAIELPKYTIILSESDFQIRLYNESSWMSARVSGTSFEQASKTGFHRLYEYIHGANSDSSKIAFTAPVLTSVPSSPPGDGYTVRMFISSHFEGNPPTPNPELKLGIEKWKPQCFAVRKFSGDSRSFPLVDTHSPTKAHTELPHAPTVMATPEGSSKRSRQQPQHLKDYVVTCPSSRRKGNSVRRE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00705 191 SUPERFAMILY Probable bacterial effector-binding domain 6 128 IPR011256 -
Cca11g00705 191 Gene3D Regulatory factor, effector binding domain 8 135 IPR011256 -
Cca11g00705 191 PANTHER HEME-BINDING PROTEIN-RELATED 7 127 IPR006917 -
Cca11g00705 191 MobiDBLite consensus disorder prediction 157 174 - -
Cca11g00705 191 MobiDBLite consensus disorder prediction 131 191 - -
Cca11g00705 191 Pfam SOUL heme-binding protein 10 127 IPR006917 -
Cca11g00705 191 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 7 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00705 Cca-Chr11 11996671 12001646 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00705 - - gmx:100500604 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00705 11 11996671 12001646 Cca11g00705 11 11996671 12001646 ECH