Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00693 ATGGTAATAGTTGCATTGTCCTCCTCCCTCCCCGGCGGGAGAAACCTCTTCTCCTCGATaccaccaacgccaccgccccccgaccccgtctccgccactccgccgccgccaATTCCCATCCCCAAGTACCCCCCTCCGCGCAAGTCCCAACCCCCGCCGCCACCCTCTCCGAACCCCGGCCTCAAGTACCACCGCGAGACCAAGTACCACAAGCCCGTCAGCGACGGCGGCGTCATCGCCTCCGACGGCGCGGACCGCTCCGTCATCATCGGCGAGTCCGGCGTGTCGTACCTGCTCCCCGGCGCGCCGTTCGAGTTCCAGTTCAGCTACTCGGAGACGCCGAAGGTGAAGCCGCTGGCCATCCGCGAGCCGGCGTTCCTGCCGTTCGCGCCGCCGACGATGCCGCGTCCGTGGACGGGGAAGGCGCCGCTGAAGAGCAGGAAGAAGAAGGTGCCGCTGTTCGACTCGTTCAACCCTCCGCCGCCCGGCGCCAAGGGCGTGAAGCACGTGGAAATGCCCGGGCCGTTCCCCATGGGACAGTTCCCGAAGGAGGGTCAGACGAGGGAGGAGATTCTCGGTGAGCCTCTCAAGAAGTGGGAGATACAAATGCTTGTTAAACCCATGGTGTCTCATAACCGCCAGGTTAATCTTGGAAGGGATGGATTAACGCATAATATGCTGGAGTTGATACATTCACATTGGAAGCGTCGCCGTGTCTGTAAAGTTCGTTGTTTAGGTGTTCCAACTGTAGATATGGATAATGTTTGCCATCATATTGAGGAAAAAACAGGGGGGAAAATAATTCATCGAGCTGGTGGTGTAGTTTATCTTTTTCGTGGCAGAAATTACGAGTATAAAACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCGGCTGCTCCTGTTTACCCAAAACTTATACAAGATGCTCCAGGAGGATTAACGAAAGATGAAGCTGATGAATTACGGATGAAGGGGAAAAGCCTGTTGCCAATATGTAAATTAGCCAAAAATGGAGTATATACATCCCTTGTAAAGGATGTCAGAGAGGCTTTTGAAGGAAGTATTTTGGTGAAAATTAACTGCAAGGGATTGGATCCTAGTGATTACAAGAAATTAGGTGCCAAGCTTAAGGATTTGGTCCCTTGTGTGCTGTTGTCTTTTGATGATGAACAGATACTGATGTGGAGGGGAAAAGACTGGAAATCAAGGTACCCACATCCTCCCCCAGTTTTTTCACCTTCAAAAGCTGGTATTACAGGGAGTTTGGAAACATCAGGTGACACTGATGACAAGCAATCTAAGCATGGTGGTAACAATGTGGTGAACACAAGCCCAAAAATGTTGTCTCTGTGGAAGCGTGCAATTGAGTCAAGCAAAGCTTTGTATCTGGATGAGTTTAATCTTGGTCCTGATGCCCTCTTGGAGAAGGTAGAGGAATTTGATGCTGCTTCACTGGCCTTGGAGCACTCCCATCCAGCATTTAGTTTGCCAAGTCTAAACGATGCTGAAGGTCCAGCTCCAAACTTTGAAGATAGTTATTCTAGTGATGGCTTACCTACtgaagaggaagaggatgaagaggattatgttgactaccatgatgatgaagatgatgaCTCGTATGTAGTGGACACATCAGCTCAACCTGGATCATTACCTGTTGATAAGATTGTTGAAAAGCTAAAACAAAGACCATTGGGAAAAAAACTTGATTCAAAATAA 1725 0.4672 MVIVALSSSLPGGRNLFSSIPPTPPPPDPVSATPPPPIPIPKYPPPRKSQPPPPPSPNPGLKYHRETKYHKPVSDGGVIASDGADRSVIIGESGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKAPLKSRKKKVPLFDSFNPPPPGAKGVKHVEMPGPFPMGQFPKEGQTREEILGEPLKKWEIQMLVKPMVSHNRQVNLGRDGLTHNMLELIHSHWKRRRVCKVRCLGVPTVDMDNVCHHIEEKTGGKIIHRAGGVVYLFRGRNYEYKTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKDEADELRMKGKSLLPICKLAKNGVYTSLVKDVREAFEGSILVKINCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYPHPPPVFSPSKAGITGSLETSGDTDDKQSKHGGNNVVNTSPKMLSLWKRAIESSKALYLDEFNLGPDALLEKVEEFDAASLALEHSHPAFSLPSLNDAEGPAPNFEDSYSSDGLPTEEEEDEEDYVDYHDDEDDDSYVVDTSAQPGSLPVDKIVEKLKQRPLGKKLDSK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00693 574 MobiDBLite consensus disorder prediction 497 559 - -
Cca11g00693 574 MobiDBLite consensus disorder prediction 18 60 - -
Cca11g00693 574 Pfam CRS1 / YhbY (CRM) domain 198 279 IPR001890 GO:0003723
Cca11g00693 574 Pfam CRS1 / YhbY (CRM) domain 314 397 IPR001890 GO:0003723
Cca11g00693 574 Gene3D - 195 291 IPR035920 -
Cca11g00693 574 SUPERFAMILY YhbY-like 195 288 IPR035920 -
Cca11g00693 574 MobiDBLite consensus disorder prediction 11 64 - -
Cca11g00693 574 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 10 564 IPR044599 GO:0000373
Cca11g00693 574 MobiDBLite consensus disorder prediction 517 543 - -
Cca11g00693 574 MobiDBLite consensus disorder prediction 410 442 - -
Cca11g00693 574 SMART CRS1_YhbY_2 196 279 IPR001890 GO:0003723
Cca11g00693 574 SMART CRS1_YhbY_2 314 397 IPR001890 GO:0003723
Cca11g00693 574 Gene3D - 314 408 IPR035920 -
Cca11g00693 574 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 10 564 - -
Cca11g00693 574 ProSiteProfiles CRM domain profile. 312 408 IPR001890 GO:0003723
Cca11g00693 574 SUPERFAMILY YhbY-like 314 405 IPR035920 -
Cca11g00693 574 ProSiteProfiles CRM domain profile. 194 290 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00693 Cca-Chr11 11688780 11699724 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00693 - - gmx:100801953 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00693 11 11688780 11699724 Cca11g00693 11 11688780 11699724 ECH