Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00689 ATGCAAAAGCCTCAACTCCACTCCTTCATCAGACCCATCACAACTCTTACACCTCCACACGCTAACACCACCCACTCTGTCTTCTTCGACAACCGCCAAATCCACGCTTTCATAAAAAGCAGGAACCTCAACGCTGCACTTGCACTGTTCCGCAGCATGCCACTGCGAGATACCGTCACCTACAACTTGATCATTTCCGGGTTCCACAAGCAACCCAATCATGCTCTTCGTTTCTACGCCGAAATGGGTTTGCTTGGGATAAGGGAAAGCTCGATCACGCTCTCCTCTCTAGTAGTGGTTTGCACCAATGATGGGTTTTTAAGAGAGGGTGTTCAGGTGCATTGCAGAGTGGTCAAGCTCGGGTTTTTATGCAACGTGTTCGTTGGCGGTGCGCTTGTTGGGTTTTACTCGCACGTGGGGCTAAGGGGGGTGGCACTGGAATTGTTTGATGAGTTGCCAGAGCGAAATTTGGCTGTGTGGAACGTGATGCTACGTGGGTTGTGTGAACTGGGTCGTGCTGAAGTTGAGGACTTGTTGGGGTTTTACTCTCGGATGTGTTTTGAAGGTGTGAAGCCAAATGGGGTTACGTTTTGTTATTTGCTTAGGGGGTGTGGTAATCAGAGACGGTTGCATGAAGGGAAGAGGATTCAAGGGTGTGTTTTGAAGCTGGGTTTGGTGGAATCAAATGTATTTGTTGCTAATGCTTTGGTGGATTTTTACTCTGCTTGTGGCTGTTTGGTTGGTGCAAGGAAGTGCTTTGAGGACATAGGAAATGAGGATGTTATTTCGTGGAACTCGCTGGTTTCTGTTTATGCGGAGAACGATTTGTTGTGTGATGCTTTGGAGGTGTTTAGTGTTATGCAGCTGTGGGGGCAAAGGCCCTCGGTTCGTTCTTTGGTGGGTTTGTTGAATTTGTGCAGTAGAAATGGAGAGCTTTGTTTGGGGAAGCAGGTTCATTGTCGTGTGATGAAGTTGGGTTTTGATGAAGTGAGTGTGCATATTCAGTCTTCTTTGATTGATATGTATGGAAAGTGCAGGGACATTGAGAATTCTGTTGCTGTTTTTGAATGCCTTCCCAAGAGAACTTTGGAGTGTTTCAACTCATTGATGACCTCTTTGTCTCATTGTGATGCGGTTGATGATGTGGTTGAATTGTTTGGTTTGATGATTGATGAGGGTCTTCTGCCGGATGAAGTAACCTTATCAACAACACTGAAGGCTGTGTCAGTGTCTGCTTCAGCAAGCTTCATGAGTTCCCAGTTACTGCATTGTTATGCATTAAAGTCTGGACTTGGAGGAGATGCTGCAGTTGCATGCTCCCTCATGGATGCATATTCAAGATGCGGGCACGTGGAACTTTCTCATCAAATTTTCTTGAGACTTCCTTCTCCCAATGCTATTTGCTTGACATCCATGATCAAAGCATATGCCCAAAATGGAATGGGGAAAGAGGGAATTGCGGTGCTTGAAGCTATGATCGAGAGGGGACTAAAGCCAGATGCAGTTACCTTCTTATGTGCATTAACGGGTTGTAACCACACAGGATTAGTTGAGGAAGGAAGAACAGTCTTTGACTCCATGAAATCTATTCATGGGGTCGATCCAGATTGCCGCCATTTTTCTTGCATGGTGGATCTTTTATGCCGTGCAGGACTTCTACATGAAGCTGAAGAGTTTCTACTTCAGGCACCAGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTAAGAAGTTGCAGGGTCCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAGTGTTAGTTGAGCTAGATCCGCATGATCCCGCAGTGTGGTTGCAAGCTTCAAATTTTTATGCTGAAATTGGAAATTTTGATGCATCAAGGCAAATCAGAGAGGTTGCTCTAGCAAGGAAGATGACTAGGGAGATTGGTCATACAGCTCATGGAGTTGTAGGAAACATGATGTGTGACAACATTGGCATGCTCGAAGAACTAAAAAGCCTGGAGGCCATGGACATAGAAGATGAAAACGAGGAAGAACATTCTGACATTCCTTCATGGAGAAGCGAGCGTGGTGGAAAAGTTCTTGTGAATATTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTACAAAAAGCATGGGAAGTTGCATGCTCTACATCAAAATCTGTTTTGTTGATTCCTCAAGGACGCCGTTACCTAGTTAATGCATCAAGATTCAGAGGGCCTTGTGCAGACAAGCTAATCATCCAGATCGATGGAACATTGGTTGCACCAGATGAGCCTAAGAACTGGGATCCAAAACTACCACGGGTTTGGCTTGATTTTTCTAAATTGGATAAAGCTATTTTCCAAGGCTCTGGAGTCATTGATGGCTCAGGAAGCAAATGGTGGGCAGCATCATGCAAAAAGAACAAGTCAAATGGGTCATTGCAGGCCTTAACCATTGATACAAGTACAGCAATAAAGGTGAAAGGACTCACAATCCAGAATAGCCAACAGATGCATTTTACCATATCACGATGTGATTCTGTTAGAATTACTGGCGTGAAAGTGTCATCACCAGGAGATAGCCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATTATTCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCCAATATCAAAATGAAGAGAATTTATTGTGGACCTGGACATGGAATCAGCATTGGAAGCCTTGGAAAAGACAACTCAACTGGCATAGTCACGAAAGTAATTTTGGATACAGCAGTTCTCAGGGAGACTACCAATGGTGTCAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGTTAAAGGGGTACGTTTTCAGAATGTGAGGGTGGAGAATGTATCTAACCCTATTATTATTGACCAATTTTACTGTGATTCACCATCCACTTGTCAAGACCAGACATCAGCTGTGGAGATAAGTGAGGTGATGTATCAGAACATAAGTGGCACGACAATGAGTGCAAAGGCCATTAAATTCGATTGCAGTGACACAGTCCCATGCAACAACCTCGTCCTTAGCAATGTCGACTTAGAGAAACAAGATGGCACAGTTGAAACATACTGCCACTCAGCTCAGGGTTTCCCCTATGGGGTGGTGCACCCTTCTGCTGATTGCCTTAATTCCAACGACAAAATCTCTCAACTTGCACAATCAACTACAGAAGAGGATATTCGTCACACTGAACTATAA 3246 0.443 MQKPQLHSFIRPITTLTPPHANTTHSVFFDNRQIHAFIKSRNLNAALALFRSMPLRDTVTYNLIISGFHKQPNHALRFYAEMGLLGIRESSITLSSLVVVCTNDGFLREGVQVHCRVVKLGFLCNVFVGGALVGFYSHVGLRGVALELFDELPERNLAVWNVMLRGLCELGRAEVEDLLGFYSRMCFEGVKPNGVTFCYLLRGCGNQRRLHEGKRIQGCVLKLGLVESNVFVANALVDFYSACGCLVGARKCFEDIGNEDVISWNSLVSVYAENDLLCDALEVFSVMQLWGQRPSVRSLVGLLNLCSRNGELCLGKQVHCRVMKLGFDEVSVHIQSSLIDMYGKCRDIENSVAVFECLPKRTLECFNSLMTSLSHCDAVDDVVELFGLMIDEGLLPDEVTLSTTLKAVSVSASASFMSSQLLHCYALKSGLGGDAAVACSLMDAYSRCGHVELSHQIFLRLPSPNAICLTSMIKAYAQNGMGKEGIAVLEAMIERGLKPDAVTFLCALTGCNHTGLVEEGRTVFDSMKSIHGVDPDCRHFSCMVDLLCRAGLLHEAEEFLLQAPGKGDCFMWSSLLRSCRVHKNEEVGTRAAQVLVELDPHDPAVWLQASNFYAEIGNFDASRQIREVALARKMTREIGHTAHGVVGNMMCDNIGMLEELKSLEAMDIEDENEEEHSDIPSWRSERGGKVLVNIDSFGAAGDGESDDTEALQKAWEVACSTSKSVLLIPQGRRYLVNASRFRGPCADKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLDKAIFQGSGVIDGSGSKWWAASCKKNKSNGSLQALTIDTSTAIKVKGLTIQNSQQMHFTISRCDSVRITGVKVSSPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGVRIKTWQGGSGYVKGVRFQNVRVENVSNPIIIDQFYCDSPSTCQDQTSAVEISEVMYQNISGTTMSAKAIKFDCSDTVPCNNLVLSNVDLEKQDGTVETYCHSAQGFPYGVVHPSADCLNSNDKISQLAQSTTEEDIRHTEL 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00689 1081 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Cca11g00689 1081 PANTHER - 22 288 - -
Cca11g00689 1081 PANTHER - 388 643 - -
Cca11g00689 1081 Pfam PPR repeat 532 560 IPR002885 -
Cca11g00689 1081 Pfam PPR repeat 365 394 IPR002885 -
Cca11g00689 1081 Pfam PPR repeat 262 289 IPR002885 -
Cca11g00689 1081 Pfam Glycosyl hydrolases family 28 722 1040 IPR000743 GO:0004650|GO:0005975
Cca11g00689 1081 Gene3D - 682 1080 IPR012334 -
Cca11g00689 1081 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 192 IPR002885 -
Cca11g00689 1081 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Cca11g00689 1081 Gene3D Tetratricopeptide repeat domain 176 328 IPR011990 GO:0005515
Cca11g00689 1081 Gene3D Tetratricopeptide repeat domain 440 677 IPR011990 GO:0005515
Cca11g00689 1081 Gene3D Tetratricopeptide repeat domain 30 175 IPR011990 GO:0005515
Cca11g00689 1081 PANTHER OS01G0913400 PROTEIN-RELATED 22 288 - -
Cca11g00689 1081 PANTHER OS01G0913400 PROTEIN-RELATED 388 643 - -
Cca11g00689 1081 ProSitePatterns Polygalacturonase active site. 900 913 IPR000743 GO:0004650|GO:0005975
Cca11g00689 1081 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Cca11g00689 1081 PANTHER - 279 390 - -
Cca11g00689 1081 Gene3D Tetratricopeptide repeat domain 329 412 IPR011990 GO:0005515
Cca11g00689 1081 SUPERFAMILY TPR-like 445 633 IPR011990 GO:0005515
Cca11g00689 1081 PANTHER OS01G0913400 PROTEIN-RELATED 279 390 - -
Cca11g00689 1081 Pfam PPR repeat family 464 511 IPR002885 -
Cca11g00689 1081 Pfam PPR repeat family 156 204 IPR002885 -
Cca11g00689 1081 SUPERFAMILY Pectin lyase-like 690 1059 IPR011050 -
Cca11g00689 1081 SMART pbh1 870 891 IPR006626 -
Cca11g00689 1081 SMART pbh1 843 869 IPR006626 -
Cca11g00689 1081 SMART pbh1 893 913 IPR006626 -
Cca11g00689 1081 SMART pbh1 952 973 IPR006626 -
Cca11g00689 1081 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Cca11g00689 1081 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00689 Cca-Chr11 11567466 11574327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00689 680 1081 Glycoside Hydrolase AT1G23460 71.429 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00689 - - pvu:PHAVU_003G061700g 1828.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00689 11 11567466 11574327 Cca11g00689 11 11567466 11574327 ECH