Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00688 ATGAGTGGCTTCAGTTTCAGGGGCTTCACATGCATGCTTCTCATTGCATGTCTCATTTGGTCCTTCAACTTTGAAGCCTGCATTGCAAGAAGGGGTAAGCACTGGAGGCAGAGCAGAGATGTATCAGCTTCAGTGTACAAGAAAAGAGGAAAGAATTTTGGCAATAGTCACAACAGAAACCATGGTGGAGGATCAAATTCAAAACCAAAACCACCATCACATAAAGGTACACCAACATTACCAAAGCCTCCTTCACCACCACCAAATGGTAACCCCACAACTCCACCACCAAAACCTTACAATGGTGGCACTGGCACCACCTTCAATGTGCTAGATTTTGGAGCCAAGGGAGATGGAAAAACTGATGACACTAAGGCATTTCAAGGTGCTTGGGCTGAAGCATGTAAAGTAGAAGCATCAACCATGGTGGTGCCAGCAGACTACGTCTTCTTCGTGGGGCCCATTTCATTCTCGGGCCCATACTGTAAACCCAACATCGTTTTCCAGCTTGATGGCACCATTGTTGCACCAACAAGCCCCAATGCTTGGGGCAAAGGGCTACTTCAGTGGTTGGAATTTACCAAGTTGGTGGGAATTACCATTCAAGGAAAAGGCATCATTGATGGAAGAGGCTCAGTGTGGTGGCAAGACAATCCATATAATGATCCTGATGATGATCAAGAATATCTCTACGTTCCTTTCAACCAAACAGTAGCAAGTCCCCCACTGCCGATTGAAAATGAGCTTGGAGGAAAAATGCCATTCGTGAAGCCAACTGCACTGAGATTCTATGGGAGTTTTAATCCAACAGTTACAGGAATAACAATTCAAAATAGTCCACAATGCCACCTCAAATTTGACAACTGTAATGGGGTCCTGGTCCATGATGTTAGCATATCATCTCCTGGGAACAGTCCCAACACTGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTGATATATGGCAGCAGCATGGCCTGTGGAGATGACTGTATTTCAATACAAACTGGATGTTCAAACGTGTATGTACACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTTGGAAAGGATAATACCAGAGCCTGTGTTTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCTGGCTCAGTGCAAGGAGTACTATTCTCAAATATACAAGTTTCTGAAGTTGAATACCCAATTGTGATTGATCAATTCTACTGCGATAAAAGAAATTGCAAAAACCAAACATCAGCTGTGTCTCTTGCTGGAATCAACTATGAAAGGATAAGGGGGACTTACATAGTTAAGCCAGTTCACTTTGCCTGCAGTGATAGCTTACCTTGTGTGGATGTTTCTTTAACCACAATCCAATCTAGCCTAGGAGAGTTTGTCATAAGGCAAGTAAGGATAGTGTGA 1461 0.4367 MSGFSFRGFTCMLLIACLIWSFNFEACIARRGKHWRQSRDVSASVYKKRGKNFGNSHNRNHGGGSNSKPKPPSHKGTPTLPKPPSPPPNGNPTTPPPKPYNGGTGTTFNVLDFGAKGDGKTDDTKAFQGAWAEACKVEASTMVVPADYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTSPNAWGKGLLQWLEFTKLVGITIQGKGIIDGRGSVWWQDNPYNDPDDDQEYLYVPFNQTVASPPLPIENELGGKMPFVKPTALRFYGSFNPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGNSPNTDGIHLQNSKDVLIYGSSMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVEYPIVIDQFYCDKRNCKNQTSAVSLAGINYERIRGTYIVKPVHFACSDSLPCVDVSLTTIQSSLGEFVIRQVRIV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00688 486 SMART pbh1 339 359 IPR006626 -
Cca11g00688 486 SMART pbh1 369 390 IPR006626 -
Cca11g00688 486 SMART pbh1 316 337 IPR006626 -
Cca11g00688 486 SMART pbh1 289 315 IPR006626 -
Cca11g00688 486 SMART pbh1 398 419 IPR006626 -
Cca11g00688 486 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 472 - -
Cca11g00688 486 MobiDBLite consensus disorder prediction 56 73 - -
Cca11g00688 486 ProSitePatterns Polygalacturonase active site. 346 359 IPR000743 GO:0004650|GO:0005975
Cca11g00688 486 SUPERFAMILY Pectin lyase-like 105 471 IPR011050 -
Cca11g00688 486 Pfam Glycosyl hydrolases family 28 257 472 IPR000743 GO:0004650|GO:0005975
Cca11g00688 486 Pfam Glycosyl hydrolases family 28 137 220 IPR000743 GO:0004650|GO:0005975
Cca11g00688 486 MobiDBLite consensus disorder prediction 46 103 - -
Cca11g00688 486 MobiDBLite consensus disorder prediction 74 99 - -
Cca11g00688 486 Gene3D - 98 480 IPR012334 -
Cca11g00688 486 PANTHER - 6 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00688 Cca-Chr11 11538137 11544873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00688 4 472 Glycoside Hydrolase AT1G60590 61.866 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00688 - - gmx:732602 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00688 11 11538137 11544873 Cca11g00688 11 11538137 11544873 ECH