Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00674 ATGAGGCGCATGGCGATAGGAGCAGCTGCTAACTCCTCTCTTCTTCTATCTTCTAAACCCAATCCCATAACCATCCCCTTCTCCTTCTCTCTCACCAAAACGTCGTCGTTTCTCTTCTCTCTTCTCACTCCTCCACGCCGTTCCCTTTCTGCTTCTTCTTTAACCTCTCACCGTCACAACCTCTCTCATTTCGGAGATGGTGACAGCGTTGCAATTTCAAGCGAATGTTCCAAGATGCTTCTTAAAGGAATGACGTACCCTGAACTCGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCTATGATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCCCATCATATTGATGAGTTAGAAGGTTTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCCGAGTTCAAGGCTCTTGCTCTGAAAGAAATTCACACAGCATCTGATGGAACAAGAAAGATTTTATTCACATTGGATGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGACAGAGGTAGGACTACTGTGTGTGTTTCGAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTACACTGGAAGAATGGGTCTTAGGAGACATCTTACTACTGCAGAAATAGTAGAGCAGGCTGTTTTTGCCAGACGGCTGCTCACAAATGAAGTTGGTTCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCACTCCATAACATTGATAATGTCATTAAAGCTGCAGATATAATGGTGGATGAACAAGGGCTTCAGTTCAGCCCCCGCAAGGTCACCATTTCAACCAGTGGGCTTGTTCCACAGATCAAACGTTTCCTCCAGGAATCCAGATGTGCATTAGCTGTTAGTTTGAATGCTACTTCTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTCCAGACACTTCGAGAGGAGCTTTGCCTCAAAAACAACTACAAAGTTCTATTTGAATATGTGATGCTTGAAGGAATTAATGACAGTGATGGAGATGCAGAGAGGCTTATAGAGCTTGTGAAGGGCATTCCTTGCAAGATTAATCTAATCTCATTCAATCCGCACAGTGGATCATTGTTCAGACCAACCAAAGAGGAAAGGATGATTGAATTCCGTAATACGTTGGCTAGGGCAGGAGTGATAGTCTTTTTAAGGCTAAGTAGAGGTGATGATCAAATGGCTGCCTGTGGTCAATTAGGTAAGCCTGGCACCGTTCAAGCTCCATTGCTTCGTGTACCACAGCAATTCCAAATGGCAGTTGGAAGCTCATCTTGA 1329 0.4334 MRRMAIGAAANSSLLLSSKPNPITIPFSFSLTKTSSFLFSLLTPPRRSLSASSLTSHRHNLSHFGDGDSVAISSECSKMLLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNENAEFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTTAEIVEQAVFARRLLTNEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLQFSPRKVTISTSGLVPQIKRFLQESRCALAVSLNATSDEVRNWIMPINRKYKLDLLLQTLREELCLKNNYKVLFEYVMLEGINDSDGDAERLIELVKGIPCKINLISFNPHSGSLFRPTKEERMIEFRNTLARAGVIVFLRLSRGDDQMAACGQLGKPGTVQAPLLRVPQQFQMAVGSSS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00674 442 Pfam Radical SAM superfamily 185 348 IPR007197 GO:0003824|GO:0051536
Cca11g00674 442 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 78 418 IPR027492 GO:0030488|GO:0070475
Cca11g00674 442 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 50 425 - -
Cca11g00674 442 Gene3D Aldolase class I 143 423 IPR013785 -
Cca11g00674 442 Coils Coil 123 143 - -
Cca11g00674 442 Pfam 4Fe-4S single cluster domain 189 292 - -
Cca11g00674 442 SFLD methyltransferase (Class A) 78 419 - -
Cca11g00674 442 SFLD adenosine C2 methyltransferase (RlmN-like) 78 419 IPR004383 GO:0006364|GO:0008173
Cca11g00674 442 CDD Radical_SAM 189 389 - -
Cca11g00674 442 PANTHER 23S RRNA METHYLTRANSFERASE 50 425 IPR040072 -
Cca11g00674 442 Gene3D - 78 141 - -
Cca11g00674 442 SUPERFAMILY Radical SAM enzymes 178 396 - -
Cca11g00674 442 ProSiteProfiles Radical SAM core domain profile. 176 409 IPR007197 GO:0003824|GO:0051536
Cca11g00674 442 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 78 423 IPR027492 GO:0030488|GO:0070475
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00674 Cca-Chr11 11200258 11205912 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00674 K06941 - gmx:100813692 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00674 11 11200258 11205912 Cca11g00674 11 11200258 11205912 ECH