Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00673 ATGGAGGAGGAACAGGAACAGCAGCAACAAGGACAGGGCCCTGTCCCCATTGACTGGAACCAACTCCTCGACAACAGCCACTCGCCGCCGCGCGAGCTCCTCGTCGTCCCGTCCTCCGCCATGGCCTCCGATCAGCCCCCCGCCGATGACCTCCACGCGTTCACGGATCACAAGCTCAAGGAATCGATTCAGAGCATGAAGCAAACCCTCGACGGAACCGGTAGGAATTTGCCCGACAATGGCGCCAAGCTTCGCGCCACCATCGGCCGTTACCAGGATGAACTCGCTCGTCGGGAATTCAAGCGCCGTCGCCAGGAAGTTGATGAGGACCAGAAGCCGCAATCTGGACAAGCTACGAGTTCAAATGCTGTTAGTGAGGGTGTGTCTAATGAATTGAGAGAAGAGAATTTGTTGTCTCATGCTCAGCCACAATCCTCATTTGCATCTTGCTTTGTTAAAAAATTGGAAGATAATCAGACTAATTGTATAGCTAATGATGCATTTAGAAAGGAGATGTCACATTTCAACCAGAAAATACAAGACAATGGAGAGCATAGAAGAAGAAAGAAACTTCGATCATCATCAAGGCAATCACAGTTTAAATGTCCTAGTAAACTTTCCAAACGTGATACTTTTAGTGATGGTAAAGGTTGCAGGGCAACTTCCACTTTCTCTCTGCGGAATATTGGGAGAAATCTGTCAAGATGCTACCCAAAAGTGAAGGATGCTTCTCATGCAATTCAATTAGATGGCTCAAGGTCCAGGAAGGGTCATCACATTGTTCTtgatgacgatgacgatgacgatgaAGCTCGTATTGTGGAGAAAACAGAAAACAAATTTGCTGAATACCTGAAAGAAGCTAAGATCTATTTTCCGTCAAGAGATGATCCAGAGTGTGTTGAAATTTGTTACAAAGACAAAGATTGCCTTGCCCCGCAAGGTTATTTAACATCAACTATTATGAACTTCTACATTCAATATTTGCAGCAGCAAGCATTGTTGACAAATAGATCGTTATCCGATTACCATTTTTTCAATACATATTTCTACAAGAAGCTTAAAGAAGCAGTTTCCTACAAGCAAAGTGATAGAGAGATGATCTTTGCAAAGTTCAGAAGATGGTGGAAGGGTGTAAATATTTTTCAGAAGGCATATGTTCTGATTCCGATACACGAGGACCTTCATTGGAGCTTGATCATTATTTGTATCCCAGACAAAGAAGATGAATCGGGGCCAATCATACTTCATTTGGATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAGCTATTTAATTGAAGAAAAGAACTATATGGATCGTGAAGGTGCGTCTTCAGATGTTTCAATTGCAAACAGAATATGGAAGTGCCTTTCTCGAAGAATTGAATCTCAAATCATTGCGGTTCCCCAACAGAAGAATGAGTATGACTGTGGTCTTTTTGTGTTGTACTTCATTGAGCGTTTCGTGGAGGAGGCACCTCCAAGACTAAAAAGAAATGATTTAGATATGTTTGGAAAGAGATGGTTCAAACCTGAAGAGGCGTCCAATTTGAGAGTTAAAATCCGTACATTGCTTGTAGAGAAATTTCAGAATTCAATCAAGAATAAGTGTATTTCAGAATCTTCATCTGCTAGCTGTGCAAATGATTGTGTTGAGACCGTCGAGGATTCTTTGACCTAA 1698 0.4146 MEEEQEQQQQGQGPVPIDWNQLLDNSHSPPRELLVVPSSAMASDQPPADDLHAFTDHKLKESIQSMKQTLDGTGRNLPDNGAKLRATIGRYQDELARREFKRRRQEVDEDQKPQSGQATSSNAVSEGVSNELREENLLSHAQPQSSFASCFVKKLEDNQTNCIANDAFRKEMSHFNQKIQDNGEHRRRKKLRSSSRQSQFKCPSKLSKRDTFSDGKGCRATSTFSLRNIGRNLSRCYPKVKDASHAIQLDGSRSRKGHHIVLDDDDDDDEARIVEKTENKFAEYLKEAKIYFPSRDDPECVEICYKDKDCLAPQGYLTSTIMNFYIQYLQQQALLTNRSLSDYHFFNTYFYKKLKEAVSYKQSDREMIFAKFRRWWKGVNIFQKAYVLIPIHEDLHWSLIIICIPDKEDESGPIILHLDSLGLHSSKSVFDNIKSYLIEEKNYMDREGASSDVSIANRIWKCLSRRIESQIIAVPQQKNEYDCGLFVLYFIERFVEEAPPRLKRNDLDMFGKRWFKPEEASNLRVKIRTLLVEKFQNSIKNKCISESSSASCANDCVETVEDSLT 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00673 565 Gene3D - 292 532 - -
Cca11g00673 565 MobiDBLite consensus disorder prediction 101 130 - -
Cca11g00673 565 MobiDBLite consensus disorder prediction 7 27 - -
Cca11g00673 565 MobiDBLite consensus disorder prediction 63 84 - -
Cca11g00673 565 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 49 550 - -
Cca11g00673 565 ProSiteProfiles Ubiquitin-like protease family profile. 301 494 IPR003653 GO:0006508|GO:0008234
Cca11g00673 565 SUPERFAMILY Cysteine proteinases 292 533 IPR038765 -
Cca11g00673 565 MobiDBLite consensus disorder prediction 112 129 - -
Cca11g00673 565 Gene3D - 343 471 - -
Cca11g00673 565 MobiDBLite consensus disorder prediction 1 32 - -
Cca11g00673 565 Pfam Ulp1 protease family, C-terminal catalytic domain 316 519 IPR003653 GO:0006508|GO:0008234
Cca11g00673 565 MobiDBLite consensus disorder prediction 176 216 - -
Cca11g00673 565 PANTHER UBIQUITIN-LIKE PROTEASE 4 49 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00673 Cca-Chr11 11179385 11196571 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00673 K16287 - gmx:100790705 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00673 11 11179385 11196571 Cca11g00673 11 11179385 11196571 ECH