Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00670 ATGGCACTTTGGCAACACAAACTATGCATCTCATATCTACTAATCCTTTGCTTGGCCACTGTGGTTTCTTCACACAGCAGGTCTTACACAACTCCAAGTGTCACACGCTTGACTGATTCTTTCCCACGTGTACCGGTTGATCGTGCTTTTTCTAAGGCTTTTGGGGCCTCAAATGTCCAATTTCTCAGTAATGGGTCCACGGCCACACTGGCTCTTGACAAAATCTCAGGCTCTGGCTTGGTTTCACAAAGCAGATACTACTATGGATTCTTCAGTGCTGCAATCAAATTACCTTCTGGTTTGTCACCTGGAGTTGTAGTTGCTTTTTATTTGTCAAATTCAGATAAATACCCTCACAACCATGATGAGATAGATATCGAACTGCTTGGTCATGATAAGAGAAATGATTGGGTTCTTCAAACAAATCTCTATGCCAATGGAAGTGTCAGCACAGGGAGAGAAGAGAAATTCTATTTCTGGTTCGACCCAACACAACAGTACCATTATTACAGCATCTTGTGGAACAGTTATCACACAGTGTTCTTGGTGGACAATGTTCCAGTGAGGGAATTCATACATAGCAACACATATCCTTCTATTTATCCATCAAAGCCAATGTCAGTGTATGCCACAATATGGGATGGTTCAGAATGGGCTACTCATGGAGGCAAATACCCAGTTAACTACAAGTATGCACCATTTGTTGCTTCATTTTCACAAATAGAACTCAGTGGCTGCATATCTGATCCCACAGCACCAGTTTCTTCATGCTCTAAGGTCAATTCAGGCCAAGACCCAGTTAATGGACCAGAGTTTACTAAGCTGTCACAGCAGCAGATAGCAGCTATGGATTGGGCAAGAAGGAAACTCATGTTCTACTCTTACTGCAATGACAGATCCAGATTCAAAGTCATGCCACCAGAATGCCATTAA 933 0.4244 MALWQHKLCISYLLILCLATVVSSHSRSYTTPSVTRLTDSFPRVPVDRAFSKAFGASNVQFLSNGSTATLALDKISGSGLVSQSRYYYGFFSAAIKLPSGLSPGVVVAFYLSNSDKYPHNHDEIDIELLGHDKRNDWVLQTNLYANGSVSTGREEKFYFWFDPTQQYHYYSILWNSYHTVFLVDNVPVREFIHSNTYPSIYPSKPMSVYATIWDGSEWATHGGKYPVNYKYAPFVASFSQIELSGCISDPTAPVSSCSKVNSGQDPVNGPEFTKLSQQQIAAMDWARRKLMFYSYCNDRSRFKVMPPECH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00670 310 Pfam Glycosyl hydrolases family 16 50 230 IPR000757 GO:0004553|GO:0005975
Cca11g00670 310 CDD GH16_XET 47 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca11g00670 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 3 310 - -
Cca11g00670 310 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 273 309 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca11g00670 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 310 IPR044791 GO:0004553
Cca11g00670 310 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 238 IPR000757 GO:0004553|GO:0005975
Cca11g00670 310 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 309 IPR013320 -
Cca11g00670 310 PIRSF EndGlu_transf 6 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca11g00670 310 Gene3D - 29 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00670 Cca-Chr11 11127143 11129101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00670 13 310 Glycoside Hydrolase AT1G10550 62.046 3.42e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00670 K08235 - gmx:100778993 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00670 11 11127143 11129101 Cca11g00670 11 11127143 11129101 ECH