Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00655 ATGGATAAGCACCTTCTCGCGCTGGCTCTCACTCTTCAGCTCCTACTCGCCACTCTCCATGTTTCTGCTGCACCTTCCACCACTTCCCCTGCAAAAATTGTTAGTGGGTTTCTCTCCAATGCTGTGCCTGCTTTCACCAAGTGGGTGTGGTCGCTCAAGGCCACCACCAAAACGGCGGTTTCGAGCAGGTCAATGATGAAGTTTGAGAGTGGCTACAGTGTGGAGACTGTGTTCGATGGAAGCAAGCTTGGGATCGAGCCTTATGCTGTTGAGGTGTTGCCCAATGGGGAGCTTCTCATTCTTGATTCGGCTAATAGTAACATTTACAGGATTTCGTCCTCGCTTTCTTTGTACAGCAGACCCAAGCTGGTGGCAGGGTCAGCCGAAGGATATTCTGGACATGTTGATGGGAAGCTAAGAGAGGCTAGGATGAACCATCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTACAAATATGGCAATTAGGAAAATTGGTGATTCAGGGGTCACAACAATTGCTGGAGGAAAATGGAGCCGTGGTGGGGGCCATGTTGATGGACCAAGTGAAGAAGCAAAATTTTCTGATGACTTTGATGTAGTTTATGTTGGAAGTAGCTGTTCGTTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATTCAACTCCATTTTGATGATTGTGCCTATCAATATGGCAGTGGATTCCCACTTGGGATTGCAATGCTTGTTGGGGCTGGCTTCTTTGGTTACATGTTGGCATTACTGCAGCGTAGGCTCAGTACAATTGTAGCATCCCAAGAAGCTGAGGTTCCAGTTACAGTAACATCTTCGGTTCCTCCTAGTCCATATCAAAAGCCCTTGAAATCTGTCAGGCCTCCTTTAATTCCATTGGAGCATGAACCTGAGAAGCAGGAAGAAGGTTTCTTTGGATCCCTTGGGAAGCTTCTCACCAACGCTGGCGCATCAATGGTGGAGATAATGGGAGGATTATTTCCTTCTTTCAGAAGAAAATCGCTGAGTCACCAATTTCACCGGCAACCACTGCTCCAGCAGCCTCAGAAGCAAGTAAATGCTTGGCCAGTGCAGGAAAGTTTCGTGATTCCTGACGAAGATGAACCCCCTTCTATCGACACAAGAGCACCAACCCCACGAAAGACTTATCCTTTCATGTCCAAGGATGCTGAGAAAATGCAGCAACTGCGGCAAAGTCGAGCATTCTACAGTGGATGGGATGGAGATCTCCACCAGCAGCAACAACAGCAACAAAAATATCAGCATCGTAACCAGTACCGATCGTCGATCCCCCACACATACTACGAGCAGAGCCATGAGACAACCAACGAAATCGTGTTTGGGGCAGTGCAGGAACAGGAAAGGAAGCAAGAGGCTGTGGTTATCAAGCCTGTGGATTATGGGGAGTCACCATACGAACATCACAATATTAGGTCTAGAATGAGTTCCATGGGTTATGGCTACAACAGGTATTGA 1512 0.4749 MDKHLLALALTLQLLLATLHVSAAPSTTSPAKIVSGFLSNAVPAFTKWVWSLKATTKTAVSSRSMMKFESGYSVETVFDGSKLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARMNHPKGITVDDRGNIYVADTTNMAIRKIGDSGVTTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPLGIAMLVGAGFFGYMLALLQRRLSTIVASQEAEVPVTVTSSVPPSPYQKPLKSVRPPLIPLEHEPEKQEEGFFGSLGKLLTNAGASMVEIMGGLFPSFRRKSLSHQFHRQPLLQQPQKQVNAWPVQESFVIPDEDEPPSIDTRAPTPRKTYPFMSKDAEKMQQLRQSRAFYSGWDGDLHQQQQQQQKYQHRNQYRSSIPHTYYEQSHETTNEIVFGAVQEQERKQEAVVIKPVDYGESPYEHHNIRSRMSSMGYGYNRY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00655 503 Gene3D - 39 229 IPR011042 -
Cca11g00655 503 PANTHER - 1 501 - -
Cca11g00655 503 SUPERFAMILY NHL repeat 73 231 - -
Cca11g00655 503 PANTHER NHL REPEAT PROTEIN 1 501 - -
Cca11g00655 503 Pfam NHL repeat 145 170 IPR001258 GO:0005515
Cca11g00655 503 MobiDBLite consensus disorder prediction 375 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00655 Cca-Chr11 10756819 10760325 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00655 - - gmx:100781836 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00655 11 10756819 10760325 Cca11g00655 11 10756819 10760325 ECH