Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00643 ATGCGTACCCTTAAGGTGCCCATCAGTTTATATGTATTTTCGAAGTTCTTAGTAATTTGCATGATCATATCTTCTTTAGTTGATTCAAGTTATTCGGTGTGTGATTTTGAGGCAATCTTCAACTTTGGAGATTCAAATTCGGATACGGGTGGGTTTCATACAGCCTTTCCTTCACAGCCTCGTCCCTATGGAATGACTTACTTCAAAAAGCCAGTGGGACGTGCTTCTGATGGAAGGCTCATTGTGGATTTTCTTGCTCAGGGTCTTGGCTTGCCATATTTGAGCCCATATCTACAATCAATTGGATCAGACTATACTCATGGGGCTAACTTTGCATCTTCAGCCTCCACTGTGCTCCCACCCACTACTTCCTTCTTTGTAAGTGGGCTCAGCCCATTTTCCCTTTCCATACAAATCAGGCAAATGGAACAATTCAAAGCCAGAGTTGATGAATTTCATCAAACAGGAACAAGGATATCATCTGATTATTTCTCAGGAGCGAAAATTCCTTCACCAGATATATTCGGAAAGGCTATTTACACGTTCTATATTGGTCAAAATGACTTCACTTCCAAAATAGCAGCCACTGGTGGTGTTGATCGAGTGAGGAACAACCTTCCTCTAATCGTTTCCCAAATTGATGCTGCTATCAAGGAGCTATATGCACAAGGGGGGCGTACATTTATGGTATTCAATCTTGGTCCTGTGGGATGCTATCCAGGATACTTGGTGGAGCTTCCTCATGTTGCTTCTGACTTTGATGAGTTTGGATGCATTGCTTCTTGCAACAATGCTGTCAATGATTATAACAAATTGTTGAAGGAGGCATTGAGTCAAACCAGAAAAAGTTTACTAAATGCTTCCCTTATTCATGTGGATACCCACTCTGCTCTGTTGGAACTCTTTCACCACCCCACATATTATGGACTAAAGGATGGTAGCAGAGCATGTTGTGGGCATGGAGGCGGTTTCTACAACTTTGAACCTAAAATTTTGTGTGGCAATATGATTGCAAGTGTATGTGATGAACCCCAAAACTATGTGAGTTGGGATGGGATCCATTTCACAGAAGCAGCAAACAAGATTGTTGCACATGCCATTCTCAACGGCTCTCTTTTTGATCCCCCTTTCCCTCTTCATGAACACTGTGATCTCCAACCTATTGGTTGA 1170 0.4214 MRTLKVPISLYVFSKFLVICMIISSLVDSSYSVCDFEAIFNFGDSNSDTGGFHTAFPSQPRPYGMTYFKKPVGRASDGRLIVDFLAQGLGLPYLSPYLQSIGSDYTHGANFASSASTVLPPTTSFFVSGLSPFSLSIQIRQMEQFKARVDEFHQTGTRISSDYFSGAKIPSPDIFGKAIYTFYIGQNDFTSKIAATGGVDRVRNNLPLIVSQIDAAIKELYAQGGRTFMVFNLGPVGCYPGYLVELPHVASDFDEFGCIASCNNAVNDYNKLLKEALSQTRKSLLNASLIHVDTHSALLELFHHPTYYGLKDGSRACCGHGGGFYNFEPKILCGNMIASVCDEPQNYVSWDGIHFTEAANKIVAHAILNGSLFDPPFPLHEHCDLQPIG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00643 389 Gene3D SGNH hydrolase 28 371 IPR036514 -
Cca11g00643 389 CDD SGNH_plant_lipase_like 38 371 IPR035669 -
Cca11g00643 389 SUPERFAMILY SGNH hydrolase 179 369 - -
Cca11g00643 389 Pfam GDSL-like Lipase/Acylhydrolase 39 367 IPR001087 GO:0016788
Cca11g00643 389 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 6 387 - -
Cca11g00643 389 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 6 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00643 Cca-Chr11 10518515 10522162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00643 38 378 Acyl Lipid Metabolism Gene Families AT4G10950 27.119 2.19e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00643 - - aprc:113850566 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00643 11 10518515 10522162 Cca11g00643 11 10518515 10522162 ECH