Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00626 ATGATTGGAACTCTTTGGAAACTGCAGATTGGTGCATTTAATTTGGGAACGAACGCATGCGCAAGTATAACTAACTCCCCTTTTAGTTCAGCTTCTTCTATTAACCGCGTTTGTGGACGCAAGACTCGGGAACCGAAACAAACGATGCCTTCTTTGACTTTGTTTCTGGTGGTGCTCGTCTTGGCGGCGGCTGAAACACCTCCAGCACGCGCCGCGCTGCTCGAGTCGTTCGACGCTCAACAGCGAGAGTTTGATTATTTCGCGTTGGCGTTGCAATGGCCCGGCACTTACTGCCGCCGCACCCGCCATTGCTGCCCCACCAATGGTTGCTGCAGAGGCTCCAATTCTCCAACAGTATTCACCATACATGGACTCTGGCCTGACTATAATGATGGAACCTGGCCAGCCTGTTGCTCTAGATCTAGTTTCGATCCAAAAGAGATATCGACATTGACTAATGCTTTAGAGCAATATTGGCCATCATTGAGCTGTGGCTCGTCATCAACATGTCATGGTGGGAAAGGTTCATTTTGGGCTCATGAGTGGGAGAAACATGGCACATGCTCATATCCTGTGATTCGAAATGAATATGATTATTTTGTGACAGCTCTTAATGTCTATTTCAAATATAATGTTACGGACGTTCTAAATGAGGCTGGATATGTTCCTTCTAATACAGAAAAGTATCCCCTTGGAGGCATTATCTCTGCCATTGAGAATGCTTTTCATGCATCTCCTTTAATAGTTTGCTCAAAAGATGCTGTTGAGGAACTTCGCCTATGCTTTTATAAGGACTTCAAGCCACGAGATTGTGCTGTTGGATCTGACATTAAAATTGACATGGTTACTTCAAAAGGATCTTGTCCCAGATATGTTAGCTTGCCGGAGCCGGTTTCAGCAAGGTACGGCGGACTTCAAAGTTGGATCTCTGATGATGCAACTCTTTAA 948 0.4546 MIGTLWKLQIGAFNLGTNACASITNSPFSSASSINRVCGRKTREPKQTMPSLTLFLVVLVLAAAETPPARAALLESFDAQQREFDYFALALQWPGTYCRRTRHCCPTNGCCRGSNSPTVFTIHGLWPDYNDGTWPACCSRSSFDPKEISTLTNALEQYWPSLSCGSSSTCHGGKGSFWAHEWEKHGTCSYPVIRNEYDYFVTALNVYFKYNVTDVLNEAGYVPSNTEKYPLGGIISAIENAFHASPLIVCSKDAVEELRLCFYKDFKPRDCAVGSDIKIDMVTSKGSCPRYVSLPEPVSARYGGLQSWISDDATL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00626 315 CDD RNase_T2_euk 84 271 IPR033697 -
Cca11g00626 315 ProSitePatterns Ribonuclease T2 family histidine active site 2. 177 188 IPR033130 -
Cca11g00626 315 SUPERFAMILY Ribonuclease Rh-like 83 294 IPR036430 GO:0003723|GO:0033897
Cca11g00626 315 ProSitePatterns Ribonuclease T2 family histidine active site 1. 120 127 IPR018188 GO:0003723|GO:0033897
Cca11g00626 315 PANTHER RIBONUCLEASE T2 57 300 IPR001568 GO:0003723|GO:0033897
Cca11g00626 315 Pfam Ribonuclease T2 family 84 271 IPR001568 GO:0003723|GO:0033897
Cca11g00626 315 Gene3D - 80 298 IPR036430 GO:0003723|GO:0033897
Cca11g00626 315 PANTHER RIBONUCLEASE 2-LIKE ISOFORM X1 57 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00626 Cca-Chr11 10200366 10207407 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00626 K01166 - gmx:100789614 456.832