Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00620 ATGGCGGTCTTCGATCACTTCGAGAACATGTACGACGTTGCGTTCAAACCCCGCTTGCTTCTCTCCCTCATCAGAGACCACCTTCCCGACGACAGCACCCCCTTTTCCAACCCTTCCAATCTCTCCAACCTCCTCTCCCTCATCAAAACGCACTCTCTCCTCTCCGAGTCCTTCGCACAATCCACGCCCCACAAACACGCTCAAGCGTGGAAATCCGCGTTCGCTTCCTGGCTCGACCGCATTTACTCCCTCATCTCCACCACTGTGCCAGATAAATGCTGGGCGGGGATCTCTCTGCTGGGGGTTACTTGTGAGGAATGCAGTTCTGAGCGTTTCCTAGAATCTTACTCTCTTTGGTTCCAAAAGTTGCTGCCTTTTCTACAGTCACCAGCAGATTGTCATTTAGTGAGGGTAGCTGCTTGTGCTTCAATGTCTGATTTATTTGTAAGGTTAAGTGGATATCCAAAGATCAAGAAAGATTCATCTTCCTGTGCTGTGAAAGTTGTTCAGCCTACTTTGAAGATGTTGAATGATGAGAACTCAGAGGCAGTATGGGATGCTGCAGTTCATTTGTTATGTACCATAATAACTTCATTCCCATTTTCTATTCGGAATCATTATGAAAGTGTTGAATCTGCTATTGCTTTAAAACTTTTGTCTGGAGGATGCAGTCTTGATATGTTGAAGAAACTCGCACATTGCCTCGCACTGCTTCCAAAATCAAAAGGGGATGAAGAAAGCTGGTCTGTGATGATGCAGAAAATTTTGATGTTAATAAATGATCAATTAAATTTAGCCTTTCATGGTCTGGAAGAAGAAACCATGCGGAACATGGTTACTAGGTTGTTGTTTTGGCCTGGTAAACATCCTCCATCACCGCTAGGAGGCTATGTATTAGCAGATGAAGTTCGTAACAAGGCATCAAACACGTCTGAGCAATCACTGATGTCTAATGTCTCTACACTTATGTTTGGCTGTCGCATGATGCTTACAAATTCATACCCTGTTAAGGTAAATGTGCCTGTTCGCCTGTTATTGGCCCTTGTTGAGAGGATTCTGATGGTAAATGGCTCTTTGCCACAAATGTCATTGCCATTCATGACTGCCAAGCAGCAAGAGAACATTTGTTCAGAACTTCCAGTTTTGCACTTGAGTAGCCTGGAATTGCTTACTGCTATCATAAAGGCCATGGGCAGTCAACTATTACCACATGCTGCCTATATTGTGCGCATTGTTACAAAGTACTTCAAAACATGTGAGCTGCCAGATATAAGGATTAAGGTCTATTCAGTCGCAAAGAATTTGCTCTTAACCATGGGTGTTGGAATGGCTTTATACCTTGCACAGGAAGTTATTAACAATGCATTTGCTGATTTAAGTAATATTGAGCATAAGAATGGTGGCATGTTAAATGGTTCAAATTTAAATGCCTCTGCTGGAGCACCGTTACCACCAGGTCATAGAAAAAGGAAGCACATCAGTACAAATGGTTCTCTTCAGGCGCATGATGAAGGTGGTGGTCTGGGTGTGGAAGTTCCCAAGAATTGTCCATTGACTCCAATTTCTCTGAGGATAGCTGCACTTGAGACATTAGAGGCTCTTGTTACTGTGGCTGGTGCTTTAAAATCCGAACCCTGGAGATCAAAAGTTGATAGCCTTTTGATAGTCGTAGCAATGGATTCTTTTAAGGAAGGACCAGTTAGTGAAGAAACAAGTATGTTTCAACAAAAGGAACCTGCTGCAACTGCCACAGACTTGCAGCTTGCTGCATTGCGTGCTCTGTTGGTATCTTTTCTTTCATTTGCTAGGGTACGACCTCCATATTTAGCCCAGGGCCTTGAACTTTTCCGTAGAGGGAAGCAACAAACTGGAACAAAACTAGCTGAGTTCTGTCTCCATGCTCTGTTAACCTTGGAAGTGCTTATACATCCTAGGGCACTTCCTTTAGTTGATTATGCCTATGCAAATAACCATTCTTTTGGTGAAGCTAATAGTAATCTCCAACATGAATATTTTGGCCGGAATGACCATACTCCATATGGTTTTCCACAAGCTCCTCCTGACTATGATGATGATCTGTGTGCTAGATGGTTTGAAAATGGCAATGAAGCTGATGTGTCATTGGCTAAAAATACAAAACACACCCCAGAGCCTTCTGAAGATTGCATAGCTAATGATCCTGAAGTCCTTGACTCCAATTTACTGGAGAGAGCTGAGATGGTGTCTGAGACTGCCACTTGTGCAGATGTTGAAATGAAAACTGTTGAGGATGAAATCAATTTGAAGTCAGATCAACCGGGAGAATCTGTGGTACAATTTCAGGAATCTGTCTCTTGCACCACAAACATCCCCGAGGCCAAAACTCACAGTGATGTAGCTGATGATAACAACGAGAAGATTGTTTCAGAAAGCACTCTTCCTCATAATGAAGCCAGTCACATGGAATCAGGACAAGGAAGCTCGGTTAATAAAGACTTTGGATTAGCTTTTCAGAGTAATAGTTTTGGGCAAAGAACCTCAGGCTCTAGTATTTTGGAGGAATTTGCTTTAAAATTTGGCCAGGACAATTCACTGGACGATGGAGATAGTTTTCCTGATATTGTGGATGGAGACCCAGATTCTAATTCCGACTGA 2634 0.4298 MAVFDHFENMYDVAFKPRLLLSLIRDHLPDDSTPFSNPSNLSNLLSLIKTHSLLSESFAQSTPHKHAQAWKSAFASWLDRIYSLISTTVPDKCWAGISLLGVTCEECSSERFLESYSLWFQKLLPFLQSPADCHLVRVAACASMSDLFVRLSGYPKIKKDSSSCAVKVVQPTLKMLNDENSEAVWDAAVHLLCTIITSFPFSIRNHYESVESAIALKLLSGGCSLDMLKKLAHCLALLPKSKGDEESWSVMMQKILMLINDQLNLAFHGLEEETMRNMVTRLLFWPGKHPPSPLGGYVLADEVRNKASNTSEQSLMSNVSTLMFGCRMMLTNSYPVKVNVPVRLLLALVERILMVNGSLPQMSLPFMTAKQQENICSELPVLHLSSLELLTAIIKAMGSQLLPHAAYIVRIVTKYFKTCELPDIRIKVYSVAKNLLLTMGVGMALYLAQEVINNAFADLSNIEHKNGGMLNGSNLNASAGAPLPPGHRKRKHISTNGSLQAHDEGGGLGVEVPKNCPLTPISLRIAALETLEALVTVAGALKSEPWRSKVDSLLIVVAMDSFKEGPVSEETSMFQQKEPAATATDLQLAALRALLVSFLSFARVRPPYLAQGLELFRRGKQQTGTKLAEFCLHALLTLEVLIHPRALPLVDYAYANNHSFGEANSNLQHEYFGRNDHTPYGFPQAPPDYDDDLCARWFENGNEADVSLAKNTKHTPEPSEDCIANDPEVLDSNLLERAEMVSETATCADVEMKTVEDEINLKSDQPGESVVQFQESVSCTTNIPEAKTHSDVADDNNEKIVSESTLPHNEASHMESGQGSSVNKDFGLAFQSNSFGQRTSGSSILEEFALKFGQDNSLDDGDSFPDIVDGDPDSNSD 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00620 877 MobiDBLite consensus disorder prediction 477 506 - -
Cca11g00620 877 Gene3D - 41 221 IPR011989 -
Cca11g00620 877 PANTHER PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 9 874 - -
Cca11g00620 877 PANTHER PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 9 874 - -
Cca11g00620 877 SUPERFAMILY ARM repeat 72 456 IPR016024 -
Cca11g00620 877 MobiDBLite consensus disorder prediction 854 877 - -
Cca11g00620 877 Pfam rRNA processing/ribosome biogenesis 21 220 IPR012583 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00620 - - gmx:100800871 1398.65