Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00614 ATGGCTACTGCAAATGGTGGCACCGGAACTGAGGAGCACAAGAGAAAAACCAATGATCATTTTCTTAAGTCAGGGGGACACACAAACATGCCAAGGTCACCTAGATTGTGCACACCTATTAAAAAGGAATGGCCAGAAAATTTGCCAAAGGACAATGTGATTGGTAATGAGGATAATGGTTTGAATAGATATGTTACTTCCTTAGCTGGATCTGGACTTCCTAGTACTAGTTTTTGTTCCACAACAGATTGCGAACACATTGTTGAAGAGTTAACTGCTAGGAACTATAAGAACCAGAATATTGATTTAGTTAGCCACACAAGACATGCTCAGAGGAATCAATTCATGATTGAGTCTAAGTATAATAGCTTGAGTAAAGAAATTGTCCCCAAGGTTGAGGAACAGATGCCGCTCAGATTAAGCAAAGGACTTAAGGGAATTGATTCTGAATTTTGGGGGCTGAAGTCTCTGCCTAGTAAGAGTGTAAATCATGACTCGCTAAAAGTCTCAGCGGATATAGGCAATATAAACAAGGCTATCATCTCAAACAATGCACATCATATTAGCAGTATAGCTCAGAGTACTTCATCTGCATATAACTATCCACAATTGATTGTAAAGCAAACAAGGAAGGGAAAGGGGGTTATTTCCAAGGATGTAGACAAGAGCTTCAGAATTGAAGGAGCACTTGAGAGCAAGGAGGATGAAAAACCTGCTTTTACAGCCAAGTTTCAGTCTGATACACCGCTGAGATCAAATGTTGATGATAATAAGCCCTTATTAGAAGGAACTGTCATGTCTGGTAGCAATGGACTCAACTTAAGAGAGTGGCTGAAGTCTGAAGGTCTTAAAATGAAGAAATCAGGAAGGCTTGGTATATTTAAGCAGATGTTGGAATTGGTTGATTTTGCGCATTCACAAGGACTTGTCTTGTTAGACTTTCAACCATCTTTTTTCACTTTATTGCCTTCAAGTAAGATTAAGTACATTGGTTCATATGGCCATCAAGAGTTAGATGATGAAGTCATGACATGCAATGTGAGTAGGAAAAGACCTCTGAAGCAGAATACCTGTGCTTGCCAAAATTTGAGTACGAAGCAGCAAAAGCTCTCTGAGGAGACAGGATCTTTTAGGAAGCAGCATCACTTCACCTGTATTCATGGTAGCAGGACCACAATGAACCAAACTGACTGTGACTCAAACAGACCCTTGGAATCAAGGAGTAAAGAAAGTATGTGCAAAAACAGTTCTAGTTGTCAATGTACTTGTACTGAAGAAAAGCAGTTTCAGTCAGCAAGCATTCAGTTAGAAGAGAAGTGGTATTGGAGTCCAGAAATGCTCAATGATGGAGTTTGCACATTTTCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTGTGCAATATTGAGTCACGGGAGGCCCATTCAACTGTGATGATGGATTTATGTTATAGAATCTTACCGCCTAAATTTCTAGCGGAAAATCCAAAGGAAGCTGGGTTTTGTCTTTGGCTTCTGCATCCTGAACCTTCTTCTCGCCCCAATTCCAGGATGATTTTGGAATCTGAACTTATATGTGAATCAGAGGAATCAAATTCTGTTGATGATGTTGGAATATCTGATGATGAGGCTGAAACAGATCAATTACTACATTTTCTAATTTCACTCAAAGAAGAAAAGAATAAACAGGCAGCCAAGTTGGAAGAAGAGCTAAATTTCTTGGATGAAGATATTAAGGAGATAGAAAGGAGCTATTCATTGGGGACAGATTCAGTATTTCCTTTGGCACAAACGAACAATCCTGAAGTGAGAGCAAGCAGTTTACATTCTCATGATTCTCTCAGTTCAGACATTAGTAGACCCATTCAAAGGTTATTTATTGATGAAGAAAGATTTATGAGTAACATAAATCAGCTAGAGAATGCTTACTTTTCCGCGAGATTCCAAGTCCTGCTGAAAGAGGCTTCATCTGTTTCAAGCAATGATAAAAATTTGATGGAAAGTAGACCGAGGTTGCCTCATGTGGAGAATGTTAATAAGGAGCCTAGAAGAATTCAGAGTTCTGTTGGTTGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGAAGATTAAGAAATAAAGATCTGCTAAGTTCTGCCAATGTAATGTGTGCTTTAAGTTTTGACCGTGATGAGGATTACATTGCAGCAGGAGGAGTTTCAAAGAAAATCAAGATTTTTGACCTCAATGCTATTTCAAGCGATTCTAATGACATCCAGTACCCAGTAGTTGAGATGTCAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACACTTGCATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGACACAGGTCAGCCATTGTCCCAATACATGGAGCACCAAAAAAGAGCTTGGTCTGTTCACTTTTCTCAGTCTGACCCAAAATTGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTCTGGAATATCAGCGAGGCATGCTTTCTTTTATGCACTTTAAATAGCAAACCATTACTAACACACAGTATATTGAGAAATTCTGTGGAAACCATCAAGATGCTTGCCAATATATGCTGTGTTCAGTTCTTTGATTCATCAACAAATCTTTTGTTTTTTGGATCAGCTGATCACAGGGTTTATGGTTATGATATTCGTCACACTAGAATCCCTTGGTGCACATTAGCTGGTCATGGCAAAGCTGTTAGCTATGTAAAAATTATAGATGCTGAATCAGTTGTCTCTGCTTCCACTGACAACTCTCTGAAGCTTTGGGACCTCAAGAAAACCAGCTCTTCTGGTCTGTCAAATGATGCTTGTGTTTTAACCTTTAATGGTCATAGAAATAAAAAGAATTTCGTGGGATTATCTGTTTCGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCACTGCCAGTGCCAATTGCTACTCATAAATTTGAGTCAGTTGATCCCATTTCTGCTGATCAAAATAGTGGTGATAATCATGGACAATTTGTTTCAAGTGTATGCTGGAGAAACAAATCTAACATGCTTGTTGCTGCCAACTCAGTTGGAATTGTGAAACTATTGCAGATGGTCTGA 3180 0.3896 MATANGGTGTEEHKRKTNDHFLKSGGHTNMPRSPRLCTPIKKEWPENLPKDNVIGNEDNGLNRYVTSLAGSGLPSTSFCSTTDCEHIVEELTARNYKNQNIDLVSHTRHAQRNQFMIESKYNSLSKEIVPKVEEQMPLRLSKGLKGIDSEFWGLKSLPSKSVNHDSLKVSADIGNINKAIISNNAHHISSIAQSTSSAYNYPQLIVKQTRKGKGVISKDVDKSFRIEGALESKEDEKPAFTAKFQSDTPLRSNVDDNKPLLEGTVMSGSNGLNLREWLKSEGLKMKKSGRLGIFKQMLELVDFAHSQGLVLLDFQPSFFTLLPSSKIKYIGSYGHQELDDEVMTCNVSRKRPLKQNTCACQNLSTKQQKLSEETGSFRKQHHFTCIHGSRTTMNQTDCDSNRPLESRSKESMCKNSSSCQCTCTEEKQFQSASIQLEEKWYWSPEMLNDGVCTFSSNIYSLGVLLFELLCNIESREAHSTVMMDLCYRILPPKFLAENPKEAGFCLWLLHPEPSSRPNSRMILESELICESEESNSVDDVGISDDEAETDQLLHFLISLKEEKNKQAAKLEEELNFLDEDIKEIERSYSLGTDSVFPLAQTNNPEVRASSLHSHDSLSSDISRPIQRLFIDEERFMSNINQLENAYFSARFQVLLKEASSVSSNDKNLMESRPRLPHVENVNKEPRRIQSSVGCLGSFFEGLCKFARYSKFEECGRLRNKDLLSSANVMCALSFDRDEDYIAAGGVSKKIKIFDLNAISSDSNDIQYPVVEMSNKSKLSCVCWNTCIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSQSDPKLFASGSDDCSVKLWNISEACFLLCTLNSKPLLTHSILRNSVETIKMLANICCVQFFDSSTNLLFFGSADHRVYGYDIRHTRIPWCTLAGHGKAVSYVKIIDAESVVSASTDNSLKLWDLKKTSSSGLSNDACVLTFNGHRNKKNFVGLSVSDGYIACGSESNEVYCYHKSLPVPIATHKFESVDPISADQNSGDNHGQFVSSVCWRNKSNMLVAANSVGIVKLLQMV 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00614 1059 PANTHER LIGASE COP1, PUTATIVE-RELATED 1 1059 - -
Cca11g00614 1059 SUPERFAMILY Protein kinase-like (PK-like) 265 526 IPR011009 -
Cca11g00614 1059 ProSiteProfiles Protein kinase domain profile. 167 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00614 1059 ProSiteProfiles Trp-Asp (WD) repeats profile. 814 849 IPR001680 GO:0005515
Cca11g00614 1059 Gene3D - 698 1059 IPR015943 GO:0005515
Cca11g00614 1059 ProSitePatterns Trp-Asp (WD) repeats signature. 937 951 IPR019775 -
Cca11g00614 1059 PRINTS G protein beta WD-40 repeat signature 937 951 IPR020472 -
Cca11g00614 1059 PRINTS G protein beta WD-40 repeat signature 791 805 IPR020472 -
Cca11g00614 1059 PRINTS G protein beta WD-40 repeat signature 834 848 IPR020472 -
Cca11g00614 1059 SMART WD40_4 912 950 IPR001680 GO:0005515
Cca11g00614 1059 SMART WD40_4 719 754 IPR001680 GO:0005515
Cca11g00614 1059 SMART WD40_4 807 847 IPR001680 GO:0005515
Cca11g00614 1059 SMART WD40_4 1014 1057 IPR001680 GO:0005515
Cca11g00614 1059 SMART WD40_4 765 804 IPR001680 GO:0005515
Cca11g00614 1059 SMART WD40_4 872 908 IPR001680 GO:0005515
Cca11g00614 1059 SMART WD40_4 961 1000 IPR001680 GO:0005515
Cca11g00614 1059 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 919 952 - -
Cca11g00614 1059 Gene3D Transferase(Phosphotransferase) domain 1 270 539 - -
Cca11g00614 1059 SUPERFAMILY WD40 repeat-like 728 1055 IPR036322 GO:0005515
Cca11g00614 1059 Pfam WD domain, G-beta repeat 808 847 IPR001680 GO:0005515
Cca11g00614 1059 PANTHER PROTEIN SPA1-RELATED 2 1 1059 IPR044630 GO:0009640
Cca11g00614 1059 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 959 IPR001680 GO:0005515
Cca11g00614 1059 Coils Coil 553 587 - -
Cca11g00614 1059 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 814 849 - -
Cca11g00614 1059 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00614 Cca-Chr11 10035951 10057444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00614 811 1014 Miscellaneous Gene Families AT5G08390 23.902 1.80e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00614 K16240 - gmx:100802144 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00614 11 10035951 10057444 Cca11g00614 11 10035951 10057444 ECH