Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00612 ATGCCTGAGAAGGTGGAAGAATTTAACATGGAGAAAGTGCTGGAGGAATTTGAGAGGGTGACAAAGGATGCTGAGAGGATTCAAAGGGAAACTCTGAAAAGGATTTTGGAAGATAACGCTTCAGCTGAGTACTTGCAGAATTTGGGACTGAATGGGAGGACTGACCCTGAGAGTTTCAAGGCCTTTGTTCCACTGGTCACTCACAAAGAATTGGAGCCTTATATCAACAGAATACTTGATGGTGATTTTTCTTCTATTCTCACTGGCAAGCCCATCACAACCATGTCTTTGAGTTCTGGCACTACTCAGGGAAAGCCAAAATATATACCATGGAATGATGAGTTGTTTGACACCACATTGCAGATATACCACACCTCTTTTGCCTTTAGGAACCGGGAATTTCCCATAAACAATGGCAAGGCCTTGAGCTTTATCTATAGCAGCAAGCAGTTCAAAACCAAAGGGGGTGTGTTGGCAGGAACAGCTACAACCAATGTGTTCCGCAACCCAGGGTTCCGGCATGCAATGAAGGCCATTCAATCCCCATGTTGCAGCCCTGATGAAGTTATATTTGGTGCTGATTTTCACCAATCATTGTACTGCCACCTCTTGTGTGGCCTGATCTTGAGGGAAGAGGTTCAGTTGGTGTCTTCCACATTTGCACACAGCATTGTGTATGCTTTTAGGACCTTTGAGCAGCTATGGGAGGAGCTTTGTGTTGACATCAGAGAAGGGGTCCTTAACAGCAAGGTCACAGTCCCATCCATTAGGACAGCCATGTCTAAGCTTCTCAAACCTGACCCTGAGCTAGCCAACTTGATCCACAAAAAGTGCATGGGGCTGAGCAACTGGTATGGCCTAATACCAGAGCTGTTCCCTAATGCTAAGTATGTTTATGGTATCATGACTGGGTCAATGGAACCTTATCTGAAAAAGTTGAGGCATTATGCTGGAGAGTTGCCTTTGTTGACTTCTGACTATGGATCTTCTGAAGGGTGGATAGGAACGAATGTGAAGCCAAGAGTGCCACCTGAATTGGCCACTTACACTGTGCTTCCTCAAATTGGCTACTTTGAGTTCATCCCTCTGTCAGAGCTAGAGGGAACAAAGGGTGATGAAACTTTCCTTTGTATGGATCCAAAGCCTGTGGGCCTCACTGAGGTGAAGTTAGGTGAGGAGTATGAGATTGTCATCACCAATCCAGCAGGCTTGTACCGGTACAGGCTCGGTGATGTGGTCAAGGTTATGGGGTTCCATAACTCGGCTCCAGAAGTCAAGTTTGTTCGCCGTAGCAATCTTCTGCTCAGCATCAACATTGACAAGAACACAGAGAATGATTTGCAGATAGCTGTGGAAGCAGCATCACAAGTTTTGGCAGGGGAGAAATTGGAAGTTGTTGACTACACTAGCCACATAGATTTATCCAAAGAGCCAGGACACTATGTTATCTTCTGGGAAATCAGTGGTGAAGCAAGTGAAGACGTGCTTGGTGAATGCTGCACCTGTTTGGACAAGTCTTTTGTTGATGCTGGCTACACTAGTTCCCGCAAAGTCAACTGGATTGGGGCCCTCGAACTCCGAGTCGTTCGGAGAGGAACATTCCAGAAGATTCTTGAGCATTCCCTGGCTCTAGGAGCTGCTGTGAGCCAGTTCAAGACACCAAGATGTGTAGGCCCTACAAACACCAAAGTGTTGCAAATATTGAATGAAAATGTTGTGAAGAACTATCTCAGTACTGCCTTCAATTGA 1749 0.458 MPEKVEEFNMEKVLEEFERVTKDAERIQRETLKRILEDNASAEYLQNLGLNGRTDPESFKAFVPLVTHKELEPYINRILDGDFSSILTGKPITTMSLSSGTTQGKPKYIPWNDELFDTTLQIYHTSFAFRNREFPINNGKALSFIYSSKQFKTKGGVLAGTATTNVFRNPGFRHAMKAIQSPCCSPDEVIFGADFHQSLYCHLLCGLILREEVQLVSSTFAHSIVYAFRTFEQLWEELCVDIREGVLNSKVTVPSIRTAMSKLLKPDPELANLIHKKCMGLSNWYGLIPELFPNAKYVYGIMTGSMEPYLKKLRHYAGELPLLTSDYGSSEGWIGTNVKPRVPPELATYTVLPQIGYFEFIPLSELEGTKGDETFLCMDPKPVGLTEVKLGEEYEIVITNPAGLYRYRLGDVVKVMGFHNSAPEVKFVRRSNLLLSINIDKNTENDLQIAVEAASQVLAGEKLEVVDYTSHIDLSKEPGHYVIFWEISGEASEDVLGECCTCLDKSFVDAGYTSSRKVNWIGALELRVVRRGTFQKILEHSLALGAAVSQFKTPRCVGPTNTKVLQILNENVVKNYLSTAFN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00612 582 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 582 IPR004993 -
Cca11g00612 582 Coils Coil 10 30 - -
Cca11g00612 582 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 1 582 - -
Cca11g00612 582 Pfam GH3 auxin-responsive promoter 16 557 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00612 Cca-Chr11 9936011 9940830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00612 12 579 EF-hand Containing Proteins AT1G23160 39.451 1.55e-137 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00612 K14506 - gmx:100813492 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00612 11 9936011 9940830 Cca11g00612 11 9936011 9940830 ECH
Cca03g03132 03 52766070 52769194 Cca11g00612 11 9936011 9940830 PCT